Protein Model on 4gl2_B_1_D_1
(TEMPLATE: 
4gl2
)Protein Model on 4gl2_B_1_D_1
(TEMPLATE: 4gl2
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DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [615 aa] | Interferon-induced helicase C domain-containing protein 1 :IFIH1_HUMAN | |
| 2 | b | D 1 (E) | polymer(polyribonucleotide) | RNA (5'-R(*AP*UP*CP*CP*GP*CP*GP*GP*CP*CP*CP*U)-3') | 379K 380Q(E) 381H(A) 507Q 511Q 718V 719G(T) 720N 750K(R) 829C(M) 830H 875I(T) 877V(M) 888K 907K 908W (identity: 56.2 %/37.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4gl2_B_1 identity=37.9% |
queryA 244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFE---RHGYRVTGISGATAENVPVEQIVE: 339
:* ** * * ** *** *** ******* * * ** ** *** * ** * * * *** * ** * :
4gl2_B_1 9:RPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQ---LFRKEFQPFLKKWYRVIGLSGXXXLKISFPEVVK: 105
SecStr : HHHHHHHHHHHSS EEEE SSTTHHHHHHHHHHHHHHHHHHHT B EES HHHHHH---HHHHTHHHHHTTTS EEEE --- HHHHHH:
ExpBur :eebbebbbebbbeeebbbbbbeeebbbeebbbebbeebbeebeeeeeeeebbbbbebebbbeb---beeebbeeebeeebebebbbe---eeeebeebbe:
queryA 340:NNDIIILTPQILVNNLKKGTIP-----SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG--------PLPQVIGLTASVGVGDAKNTDEALDY: 426
: **** * *** * * ** * * * **** * * ** ** ** *** **** ***** *** * * :
4gl2_B_1 106:SCDIIISTAQILENSLLNXXXXXXXGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKXXXXVIPLPQILGLTASPGVGGATKQAKAEEH: 205
SecStr :H SEEEEEHHHHHHHT ------- GGG SEEEES GGG TT HHHHHHHHHHHHHHHHHHHH ---- EEEEEES S SSHHHHHHH:
ExpBur :ebebbbbbbeebbebbee-------ebebbebbbbbbbbbbebeeeeebbebbbebbeebebbeeeee----eeeebbbbbbbbbbbbeeeeeeeebeee:
Contact : bbb
queryA 427:ICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMP: 526
:* **** *** * *** ** * * * * ** * * **** **** * :
4gl2_B_1 206:ILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIXXXXXXXPFKEKLLEIMTRIQTYCQ-----MSPMS-----DFGTQPYEQWAIQMEKKA----AK: 291
SecStr :HHHHHHHHT S TTHHHHHHHS EEEEE ------- HHHHHHHHHHHHHHHHT----- SS----- TTSHHHHHHHHHHHHHH----HH:
ExpBur :bbbbbbbbbbeebebbeeeeeebeeeeeebeeeebe-------ebeebbeebbeebbeebe-----beeeb-----ebeeeebbebbeeebeeb----be:
Contact : b b
queryA 527:DKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGF-------------DEIEQDLTQRFEEKLQELESVSRDPSNENPKLED: 613
: * * ****** ** * ** ** * * * ** * * * * * * ** :
4gl2_B_1 292:EGNRKERVC------AEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFXXXXXXXXXXXXLDETDRFLMTLFFENNKMLKRLAENPXXXNEKLTK: 385
SecStr :HT TTTHHH------HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHH ------------ HHHHHHHHHHHHHHHHHHHHHS --- THHHH:
ExpBur :eeeeeebbb------bbbbebbbbbbebbeebebebbbebbeebbeebbebee------------eeebbebbeebbeeeeeebeeebeee---eebbee:
queryA 614:LCFILQEEYHLNPETIT-ILFVKTRALVDALKNWIEGNPKLS--FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN: 710
:* * * * * * *** ** ** * * * * * * ** ** * * **** ** ** ** **:
4gl2_B_1 386:LRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVXXKAHHLIGAGHSSEFKPMTQNEQKEVISKFR-TGKXXLLIATTVAEEGLDIKECN: 484
SecStr :HHHHHHHHHHHSS TTEEEE SSHHHHHHHHHHHHSSS TT -- EEE S SSSS HHHHHHHHHHHH-HT -- EEEES SS :
ExpBur :beebbeebeeeeeebbbbbbbbeebebbebbbbbbeeeeebeeb--ebebbbbeeeeeeeeebeeeebeebbeebe-eee--bebbbbeebebbeeeebb:
queryA 711:LVILYEYVGNVIKMIQTRGRGRARGSKCFLLT-SNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH---EKFIRDSQEKPKPVPDKENK: 806
: ** * * * * * * ** * * * **** * * **** * * *** * ** :
4gl2_B_1 485:IVIRYGLVTNEIAMVQARGXXXXDESTYVLVAHSGSGVIERETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEKKMKXXXXXXXXXXXXPSL: 584
SecStr : EEES HHHHHHHH ---- EEEEE SSSTHHHHHHHHHHHHHHHHHHHHHTTSS HHHHHHHHHHHHHHHHHHHHH ------------ :
ExpBur :bbbbbbbeeebbbbbbbbe----eebbbbbbbeeeeebeeebeebeebbebbeebbeebeebeeeebeeebeeebeebbeeeeee------------eee:
Contact : bbb b
queryA 807:-KLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSR-PHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTL: 904
: ** * *** * *** * *** * * * * ** * ** *** :
4gl2_B_1 585:ITFLCKNCSVLACSGEDIHVIEKMHHVNMTPEFKELYIVRXXXXXXXXXXXXXXXGEIIC---KCGQAWGTMMVHXXXXLPCLKIRNFVVVFKNNSTKKQ: 681
SecStr : BB TTSS BGGG EEETTTEEE HHHHHH EE --------------- EEE ---SSS EEEEE ---- EEE GGG EEE SSS EEE:
ExpBur :bbbbbbbbeeebbebebbebeeeeebbbeeeebeebbeee---------------eebbb---ebbbebbebeee----ebbbebbbbbbbbeeeeeeee:
Contact : bb b b b
queryA 905:YSKW: 908
:* **:
4gl2_B_1 682:YKKW: 685
SecStr : SSG:
ExpBur :beeb:
Contact : bb
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[assembly_id:2]
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