CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
FOCUSED SITES | template(8dfv_A auth_asym_id:A) | ||||||
SiteNum | AA | label_ seq_id |
auth_ seq_id |
AA | Sec | Exp/Bur | RelAcc |
235 | T | 8 | 8 | N | T | e | 31.5 |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | |
1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [1664 aa] | Endoribonuclease Dcr-1 :DCR1_DROME |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8dfv_A_1 identity=24.1% |
queryA 234:DTNLYSP-FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV-VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAEN: 331 :* ** * ** * ** * ***** * * * * * * * ** : 8dfv_A_1 7:DNNLHTTVFTPRDFQVELLATAYE-RNTIICLGHRSSKEFIALKLLQELSRR--ARRHGRVSVYLSCEVGTSTEPCSIYTMLTHLTDLRV--WQEQPDMQ: 101 SecStr :TT S SSS HHHHHHHHHHH-S B S HHHHHHHHHHHHHHHHHH--HTTT EEEEE TT SSSSS HHHHHHHHSSSS B-- TT : ExpBur :eeeeeeebbbbbebbbbbbbbbee-bebbbbbbbbebbbbbbbbbbbbbbbe--beeeeebbbbbbbebeeeeeebebebbbeebbebeb--bbbeeebe: queryA 332:VPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLC: 431 : * ** * * ** * ** * * * ** * * : 8dfv_A_1 102:IPFDHCWTDYHVSILRPEGFLYLLETREL-LLSRVELIVLEDCHDSAV---YQRIRPLFENHIMPAPPADRPRILGL-----AGPLHSAGCELQQLSAML: 192 SecStr : SS GGG SB EE HHHHHHHHHTTSS- TTTEEEE BS SSHHH---HHHHHHHHTTTTTTS TTT B B ----- TTS STTTTHHHHH: ExpBur :eeeebebeebebbbbebebbbebbeeeeb-ebeebbbbbbbbbbebeb---beebbebbeebbeebeeeeebbbbbb-----bbbbbbbebebeebeebb: queryA 432:ASLDASVIATVKHNLEELEQVVY--KPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKD: 529 :* * ** * * * * * : 8dfv_A_1 193:ATLEQSVLCQIESASDIVTVLRYCSRPHEYIVQCAPFEMDELSLVLADVLNTHKSF--------------------------------------------: 248 SecStr :HHHHHHTT HHHHHHHSS EE EE HHHHHHHHHHHHHHHH--------------------------------------------: ExpBur :eebbebbbbebbbbbbbbbebbbbeebebbbbbbbeeeeeebbebbbeebbebebe--------------------------------------------: queryA 530:EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI: 629 : : 8dfv_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 630:TILFVK----------------------------------------------------------------------------------------------: 635 : : 8dfv_A_1 249:------LLDHRYDXXXXXXXXXXXXXXXXXXXXXXDPLNVINSLLVVLHEMGPWCTQRAAHHFYQCNEKLKVKTPHERHYLLYCLVSTALIQLYSLCEHA: 342 SecStr :------HHH ---------------------- HHHHHHHHHHHHHHT HHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :------beeeeee----------------------ebeebbebbbebbbebbbbbbbebbeebeeebeeebeeeeeeeeeebbbbbbebbeebeebbeeb: queryA -1:----------------------------------------------------------------------------------------------------: -1 : : 8dfv_A_1 343:FHRHLXXXXXSRQTIERYSSPKVRRLLQTLRCFKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX: 442 SecStr :HSS ----- HHHHHHHS HHHHHHHHHHHH ------------------------------------------------------------------: ExpBur :beeee-----eeebbeebbbbbbebbbebbeebe------------------------------------------------------------------: queryA 636:--------------------------------------------------------------TRALVDALKNWIEGNPKLSFLKPGILTGR----GKTNQ: 669 : * * * * * ** * * : 8dfv_A_1 443:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLCALIYCNQNHTARVLFELLAEISRRDPDLKFLRCQYTTDRVADPTTEPK: 542 SecStr :------------------------------------------------- B B SSHHHHHHHHHHHHHHHTT SGGGS EEE S SSS HH: ExpBur :-------------------------------------------------ebbbbbbbeeebbbebbebbbeebbeebeebeebebebbbeeeeeeeeeee: queryA 670:NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTS: 743 : * * * * * ** *** **** **** * ** ** * : 8dfv_A_1 543:EAELEHRRQEEVLKRFRMH-DCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAYHVILVA: 615 SecStr :HHHHHHHHHHHHHHHHHSS-S SEEE GGGTTT SBEEESS SSHHHHHHHHTT SSS EEEEEE : ExpBur :ebeebeeebbebbeebbee-ebbbbbbbeebbeebebbbbbbbbbbbebeebbbbbbbbbbbebeebbbbbbbb: |