[pdbjlvh2]Protein Model on 7yym_A

Protein Model on 7yym_A_1 (TEMPLATE: 7yym )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(RIGI_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [1281 aa]	Endoribonuclease Dicer :DICER_MOUSE

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7yym_A_1 identity=32.3%

queryA       246:YQLELALPAMKGKNTIICAPTGCGKTFVSLLICE---HHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGIS-GATAENVPVEQIVENN: 341
                :** ** * *    *** *  ** ****   *      *             **  *      ** *                   *        *     :
7yym_A_1     100:YQVEL-LEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKERWSQEFTKH: 198
SecStr          :HHHHH-HHHHHHS EEEE SSHHHHHHHHHHHHHHHGGGT S BTTB  BEEEEES HHHHHHHHHHHHHH SS EEEE  HHHHHT  HHHHHHHHHH :    
ExpBur          :ebeeb-bebbeeebbbbbbeeeebbbbbbbbbbbbebeebeeeeeeeeebbbbbbeeeeebeebbeebeebbebebbebbeeeebeebeeeebeebbeee:    

queryA       342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT: 441
                :   * *       ** *   ***   *  *****     ***  **      **  *    *   *****   *                          :
7yym_A_1     199:QVLIMTCYVALTVLKNGYL-SLSDINLLVFDECHLAILDHPYREIM------KLCESCPSCPRILGLTASILNG--------------------------: 265
SecStr          :SEEEEEHHHHHHHHHHT S- GGGBS  EEESGGGGTSS HHHHHH------HHHHHSSS    EEEE  TT  --------------------------:    
ExpBur          :bbbbbbbebbeebbeeeeb-ebeebbbbbbbbbebbeeebbbeebb------eebeebeeebebbbbbeebeee--------------------------:    

queryA       442:VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY: 541
                :                                                                                                    :
7yym_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       542:TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT-----------: 630
                :                                                                                                    :
7yym_A_1     266:-----------------------------------------------------------------------------------------KCDPEELEEKI: 276
SecStr          :-----------------------------------------------------------------------------------------SSHHHHHHHHH:    
ExpBur          :-----------------------------------------------------------------------------------------eebeeebeeeb:    

queryA        -1:----------------------------------------------------------------------------------------------------:  -1
                :                                                                                                    :
7yym_A_1     277:QKLERILRSDAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEAALDFINDCNVAVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAG: 376
SecStr          :HHHHHHHTSEEEE  HHHHHHHHT   EEEEEEE     TT HHHHHHHHHHHHHHHHHHHHHT   TT  THHHHHHHHHHHHHHHHHS HHHHHHHHH:    
ExpBur          :eebeebbebebebbbebbeebbeeeebeeeebebeeeebeebbeeebeebbeebeeeeeebeeeeebeeeebbeebebbbebbeebbebbbbbbbbebbe:    

queryA        -1:----------------------------------------------------------------------------------------------------:  -1
                :                                                                                                    :
7yym_A_1     377:MMVRELQKYIKHEQEELHRKFLLFTDTLLRKIHALCEEYFSPASLDLKYVTPKVMKLLEILRKYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX: 476
SecStr          :HHHHHHHHHHHH   HHHHHHHHHHHHHHHHHHHHGGG S TT  TTSSS HHHHHHHHHHHHH -----------------------------------:    
ExpBur          :eebeebeeebeebeeeebeebbeebbebbeebeeebeebeeeeebeeeebbbbbbebbebbeeee-----------------------------------:    

queryA       631:----------------------ILFVKTRALVDALKNWIE----GNPKLSFLKPGILTGRGKTNQNTGMT-----LPAQKCILDAFKASGDHNILIATSV: 699
                :                      * **  *     *   *       * *        *                    *   *  * *    * ******:
7yym_A_1     477:XXXXXXXXXXXXXXXXXILCG-IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITXXXXXXXXXXXXXXXXEFRKQEEVLRKFRAH-ETNLLIATSV: 574
SecStr          :-----------------   E-EEE S HHHHHHHHHHHHHHHHH TT  S  EEE  ---------------- THHHHHHHHHHHTT-T SEEEE GG:    
ExpBur          :-----------------ebeb-bbbbeeeebbebbbebbeebbeebeebeeeebeebe----------------eeeeeeeeeebeeee-eebbbbbbee:    

queryA       700:ADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIE-KEQINMYK--EKMMND: 763
                :  ** **  ****             *  ** **  *    *          *    **  **    :
7yym_A_1     575:VEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRN: 641
SecStr          :GGSS      SEEEE S  SSHHHHHHHHTT  SSS EEEEEEETTTHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :bbeebebeebbbbbbbeebeebebbbebbbbbebeebebbbbbeeeebeebeeeeeebeebbeebee:

Protein Model on 7yym_A_1 (TEMPLATE: 7yym )

Input Residue Numbers for Focused Sites