[pdbjlvh2]Protein Model on 5zam_A

Protein Model on 5zam_A_1 (TEMPLATE: 5zam )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(RIGI_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [1314 aa]	Endoribonuclease Dicer :DICER_HUMAN

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5zam_A_1 identity=32.8%

queryA       244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE---HHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGIS-GATAENVPVEQIVE: 339
                :* ** ** * *    *** *  ** ****   *                    **  *      ** *                   *        *   :
5zam_A_1      45:RKYQVEL-LEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFT: 143
SecStr          : HHHHHH-HHGGGTS   BBSSSTTTHHHHHHHHHHHHHHHH   TTTSS   EEE SSHHHHHHHHHHHTTS  SSB     TTT SSSSS S S  SS:    
ExpBur          :ebbbbeb-bebbeebbbbbebeebeebbbbbbbbebebebeeebebbeebbbbbbbbeeeebbeebeebbebbbeeebbebebeeeeebeeebeeeebeb:    

queryA       340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASV--GVGDAKNTDEALDYICKLCASLDAS: 437
                :     * *     * ** *   ***   *  *****     ***  **      **       *   *****   *  *     *      *   *    :
5zam_A_1     144:KHQVLIMTCYVALNVLKNGYL-SLSDINLLVFDECHLAILDHPYREIM------KLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKS----: 232
SecStr          :S SBEEE HHHHHHHTTTTTT-TT   SEEE   GGG  TT THHHHH------HHHSS SS  EEE  B  SSSSS TTTTHHHHHHHHHHHH  ----:    
ExpBur          :ebbbbbbbbebbebbeeeeee-eebbbebbbbbbbeebeeebbbbebb------eebeeeebbeebbbbbeeeebeeebeeebeeeeeebbebbeb----:    

queryA       438:VIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKA: 537
                :                                                                                                    :
5zam_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       538:LFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT-------: 630
                :                                                                                                    :
5zam_A_1     233:---------------------------------------------------------------------------------------------NAETATD: 239
SecStr          :---------------------------------------------------------------------------------------------  B   H:    
ExpBur          :---------------------------------------------------------------------------------------------ebbbbbb:    

queryA        -1:----------------------------------------------------------------------------------------------------:  -1
                :                                                                                                    :
5zam_A_1     240:LVVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEALNFINDCNISXXXXXRDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEE: 339
SecStr          :HHHHTTTT     EEE S  B  TTHHHHHHHHHHHHHHHHHHT    -----  SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH   H:    
ExpBur          :bbeebeebeeeeeeebebbbebeebeebeebbeebeebbeebeeeeee-----eebbeebebbbebbeebbebbbbbbbbbbbbebbeebeeebeeeeee:    

queryA        -1:----------------------------------------------------------------------------------------------------:  -1
                :                                                                                                    :
5zam_A_1     340:LHRKFLLFTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFT: 439
SecStr          :HHHHHHHHHHHHHHHHHHHHHHHT SSS   BS SSSSHHHHHHSS SB ------------------------------------------------  :    
ExpBur          :ebeeebeebbebbeebeeebeeebeeebeeeeebeeeeeebeeebeebbe------------------------------------------------ee:    

queryA       631:------ILFVKTRALVDALKNWIE----GNPKLSFLKPGILTGRG-KTNQNTGMTLPA----QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILY: 715
                :      * **  *     *   *       * *        ** *   **       *    *   *  * *    * *****   ** **  ****   :
5zam_A_1     440:NILCG-IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEEVLRKFRAH-ETNLLIATSIVEEGVDIPKCNLVVRF: 537
SecStr          :S    - EE S HHHHHHHHHHTTTSB S    S    SS SS    SS   TT     HHHHHHHHHHHTSH-HHHHS    S  SS      S EEEE:    
ExpBur          :ebebb-bbbbeebbbbbbbeebbeebebebbbbbbebeeeeeeeebbbeeeeeeebbeeeeebeebeeebeee-ebbebbbbbbbbeeeebeebbbbbbb:    

queryA       716:EYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIE-KEQINMYK--EKMMND: 763
                :          *  ** **  *    *          *    **  **    :
5zam_A_1     538:DLPTEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRN: 588
SecStr          :S   STHHHHHHHTT  SSS  EEEE  TTT HHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebeeebeebbbbbbbbeeeebbbbbbbbbeeeeeeeeebeeebebbeeebe:

Protein Model on 5zam_A_1 (TEMPLATE: 5zam )

Input Residue Numbers for Focused Sites