[pdbjlvh2]Protein Model on 4a2q_A

Protein Model on 4a2q_A_1 (TEMPLATE: 4a2q )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(RIGI_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [674 aa]	RETINOIC ACID INDUCIBLE PROTEIN I :D3TI84_ANAPL

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4a2q_A_1 identity=51.0%

queryA         1:MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMEAATLFLKFLLELQEEGWFRGFLDALDHAGYSGLYEAIESWDFKKIEKL: 100
                :**    ****    **   * * * *  *  *    *           *   ** ***   * *   ***** ***   *** ** **** *** * ***:
4a2q_A_1       4:MTADEKRSLQCYRRYIERSLNPVYVLGNMTDWL-PDELRERIRKEEERGVSGAAALFLDAVLQLEARGWFRGMLDAMLAAGYTGLAEAIENWDFSKLEKL: 102
SecStr          :  HHHHHHHHHTHHHHHTT  THHHHGGGTTTS- HHHHHHHHHHHHH HHHHHHHHHHHHHT  STTHHHHHHHHHHHHT HHHHHHHHTT  HHHHHH:    
ExpBur          :eeeeebeebeeebebbeebbbbbbbbeebeeeb-eeebbeebeeeeeeebeebbeebbebbbebeeeebbebbbebbeebebebbbebbeeeebeebeeb:    

queryA       101:EEYRLLLKRLQPEFKTRIIPTDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKE-RNKFSELWIVEKGIKDVETED: 199
                :*  * ****          *   *   * ***  ***** **       **  ** *** ***** *** * ***        ****             :
4a2q_A_1     103:ELHRQLLKRIEATM-LEVDPVALIPYISTCLIDRECEEIQQISENRSKAAGITKLIECLCRSDKEHWPKSLQLALDTTGYYRASELW-------------: 188
SecStr          :HHHHHHHHHHGGGG-TTS HHHHHHHHTTTS HHHHHHHHHHHHHT HHHHHHHHHHHHHT   TTHHHHHHHHHHHTT HHHHHHH-------------:    
ExpBur          :beebebbebbbbbb-bebebeebbeebeebbbeebbeebeeebeeebebbbbbbbbebbbbbbbeebbebbbebbeeebeeebbebb-------------:    

queryA       200:LEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF----------------------------------------------------------: 241
                :                                                                                                    :
4a2q_A_1     189:------------------------------------------DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX: 246
SecStr          :------------------------------------------ ---------------------------------------------------------:    
ExpBur          :------------------------------------------e---------------------------------------------------------:    

queryA       242:-KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 340
                : * * ** *** **  ***  ****** ****** ******    * * * **** *   ******* **   *** ** * ****       **   * :
4a2q_A_1     247:XKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGEXXXXXSVEKVIED: 346
SecStr          :-   HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHHHHT  SS    EEEE SSHHHHHHHHHHHHHHHGGGT  EEEE   ----- HHHHHHT:    
ExpBur          :-eeeebbebbbebbeeeebbbbbbeeebebeebbbbbbeebbeebeeeeebbbbbbbbeeeebeebeeebeeebeeeeeebeeebee-----ebeebbee:    

queryA       341:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 440
                : ***  *******    **  ****************   ****  *  ** **   *   ***  ********* ***  *    ** **  **   * :
4a2q_A_1     347:SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF-NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAIS: 445
SecStr          : SEEEE HHHHHHHHHSSS   GGG SEEEETTGGG STTSHHHHHHHHHHHHHH-TT     EEEEEES    TT  SHHHHHHHHHHHHHHHT SEEE:    
ExpBur          :bebbbbbbebbbebbeeeebeebeebbbbbbbbbeebeeeebbbebbeebbebee-eeeeeebbbbbbbeebebeebeeeeebbeebbebbbebbbebbb:    

queryA       441:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 540
                :**  *  **     **    * *  **   *  **  **  ** *   *              **** ** ***  *  *   *  ** ****** *** :
4a2q_A_1     446:TVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTI-XXXXXXXXXXXXDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFI: 544
SecStr          :   TTHHHHHHHS     EEEE    S  HHHHHHHHHHHHHHHHHHH -------------  SSHHHHHHHHHHHHHHHH   SSHHHHHHHHHHHHH:    
ExpBur          :bbeeeeeebeeebeeeebeeeebeebeebebbebbeebbeebbeebeee-------------eebeeebbeebeebbeebeeeeeeeeeebeeebebbbb:    

queryA       541:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 640
                : * ************* **  *** **  ** **      * ** **  * **  **   * *  ******* *  **   *  ** * * ** ******:
4a2q_A_1     545:CTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV: 644
SecStr          :HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHTT  HHHHHHHHHHHTTHHHHHHHHH TT   HHHHHHHHHHHHHHHH SS  EEEEESSHHHH:    
ExpBur          :bbbbbbbbbbbbbbbbbbbbebbbebbeebbebbeebeeeebbeebbeebeeeeeebeeebeeeeeebebbeebbebbbebbeeeeebebbbbbbbebbb:    

queryA       641:DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 740
                : ***   * ** *   *** *                            *   ******        ***** **** *** ****        **** *:
4a2q_A_1     645:SALKKCMEENPILNYIKPGVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNRLLIATSVXXXXXXXVQCNLVVLYEYSGNVTKMIQVXXXXXXXGSKCIL: 744
SecStr          :HHHHHHHHT STT S   EE ----------------------------  SEEEEE  -------   SEEEEES  S HHHHHT -------   EEE:    
ExpBur          :ebbeebbeebeebeebebbee----------------------------eeebebbeee-------eeeebbbbbbbeeebeebeee-------eeebbb:    

queryA       741:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFI: 790
                : **   * * *  * *** ***      * ***  *  **   *  *   :
4a2q_A_1     745:VTSKTEVVENEKCNRYKEEMMNKAVEKIQKWDEETFAKKIHNLQMKERVL: 794
SecStr          :EE  HHHHHHHHHHHHHHHHHHHHHHHHHTS HHHHHHHHHHHHHHHHT :    
ExpBur          :bbbeeebeeebeeeeeeeebbeebbeebeeeeeeebeeebeebbeeeeee:

Protein Model on 4a2q_A_1 (TEMPLATE: 4a2q )

Input Residue Numbers for Focused Sites