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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [646 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | |
2 | b | P 1 (A) | non-polymer(MG) | MAGNESIUM ION | 270K (identity: 100.0 %/94.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5f9h_A_1 identity=94.7% |
queryA 241:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 340 :****************************************************************************************************: 5f9h_A_1 11:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 110 SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHTS TT EEEE SSHHHHHHHHHHHHHHHTTTT EEEE TTT TTS HHHHHHT: ExpBur :eeeeebbebbbebbeeeebbbbbbebebebebbbbbbbbebbeebeeeeebbbbbbbeeeebbeebeeebeeebeeeeeebebbbeeebeeeebeeebee: Contact : b queryA 341:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 440 :****************************************************************************************************: 5f9h_A_1 111:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 210 SecStr : SEEEE HHHHHHHHHHTSS GGG SEEEEETGGG STTSHHHHHHHHHHHHHHSSS EEEEEES TT SSHHHHHHHHHHHHHHTT EEE: ExpBur :bbbbbbbbebbbebbeeeebeebeebebbbbbbbbebeeeebbbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbbbb: queryA 441:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 540 :***************************************************** ***************************************: 5f9h_A_1 211:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLXXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 310 SecStr : TTHHHHHTTS EEEEEE S SHHHHHHHHHHHHHHHHTTSS -------- TTSHHHHHHHHHHHHHHHH SSTTTHHHHHHHHHH: ExpBur :ebeeeeeebeeebeebebeeeebeebeeeebeebbbbbbbebeebbeeeeeee--------eeebeeebeeebeebeeebbeeeeeeeeebbbebbbbbb: queryA 541:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 640 :************************************* **************************************************************: 5f9h_A_1 311:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAXFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 410 SecStr :HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHS - TTHHHHHHHHHHHHHHHHHHHT GGG HHHHHHHHHHHHHHHH TT EEEE SSHHHH: ExpBur :bbebbeebbbbbebbeebbbebbbeebeebbeeeeee-ebebbeebbeebeeeeeebbebbeeeebebebbeebbebbeebbeeeeebebbbbbeeeebb: queryA 641:DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 740 :************************ ***************************************************: 5f9h_A_1 411:DALKNWIEGNPKLSFLKPGILTGRXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 510 SecStr :HHHHHHHHT STTTT EEEE ------------------------- SEEEES SSS S S SEEEEES HHHHHHHGGGG STT EEEE: ExpBur :ebbbebbeebeebeebebbeeeee-------------------------eebbebbbeeebbeeeeeebebbbbbbbeeebbebbbbbbbbbeeebebbb: queryA 741:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 840 :****************************************************** ********************************************: 5f9h_A_1 511:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQXXPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 610 SecStr :EES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHH -- EEEEETTT EEEETTSEEEETTTEEEE STTTTT: ExpBur :bbeeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeebeee--eeeeeeeeebbbbbbbbbbebbebeebbbbeeeebbbeeeebee: queryA 841:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922 :**********************************************************************************: 5f9h_A_1 611:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692 SecStr :TEEEEE SS EETTEEEEEEEEE STT EEEEEEEETTEEEEEE GGGEEEEETTT EE SSGGG S EE TT : ExpBur :bbeeeebeeeeeeeebeeebbbbbeeeebebebbbbbebeeeebbbbebebbbbbbeeeeebeeeeebeebebeeeebeeee: |