[pdbjlvh2]Protein Model on 8hf0_A_1_G

Protein Model on 8hf0_A_1_G_1 (TEMPLATE: 8hf0 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [1561 aa]	Dicer-2, isoform A :A1ZAW0_DROME
2	b		G 1 (N)	polymer(polyribonucleotide)	RNA (52-MER)	298N 299Q(T) 300I(V) 301P(E) 321V 325S(D) 347T 349Q 350I(V) 482T(S) 492D(Q) 635K(E) 636T(R) 637R 663G 664R 697T(S) 698S 699V (identity: 47.4 %/29.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8hf0_A_1 identity=29.7%

queryA       242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF--PQGQKGK-VVFFANQIPVYEQQKSVFSKYFE-RHGYRV--TGISGATAENVPVE: 335
                :*** *** *        * *   *** *****  *        *  *    **   *  *      **            *  *   *    *      *:
8hf0_A_1       7:KPRGYQLRL-VDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGGKRALFMCNTVELARQQAMAVRRCTNFKVGFYVGEQGVDDWTRGMWSDE: 105
SecStr          :   HHHHHH-HHHHHHS EEEE  SSHHHHHHHHHHHHHT GGGSS TTTT  EEEEEESSHHHHHHHHHHHHHH  S EEEE GGGT TT  HHHHHHH:    
ExpBur          :eeeebbeeb-beebeebbbbbbbeeeebbbbbbbbbbeeeeeebeeeeeeebebbbbbbeeeebbebbbebbeeebebebbbbbeeeebeeeeeeebeeb:    
Contact         :                                                           bbbb                    bb    b          

queryA       336:QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYN--MIMFNYLDQKLGGSSGPLPQVIGLTAS----------------------: 411
                :     *     * *         *   **     * ****     **    *  *    *        ** * ***                        :
8hf0_A_1     106:--IKKNQVLVGTAQVFLDMVTQ-TYVALSSLSVVIIDECHHGTGHHPFREFMRLFTIANQT------KLPRVVGLTGVLIKGNEITNVATKLKELEITYR: 196
SecStr          :--HHH SEEEEEHHHHHHHHHT-TSS GGGEEEEEESSGGG  TT HHHHHHHGGGTS GG------G  EEEEEES S  SS  TTHHHHHHHHHHHSS:    
ExpBur          :--beebbbbbbbbebbbebbbb-ebbebebbbbbbbbbbbbbeeebbbbbbbbbbeeeeee------ebbebbbbbebbbeeeebeebeeebeebbbbbb:    
Contact         :           b bb                                                                                     

queryA       412:---VGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVES-RISDKFKYIIAQLMRDTESL-------AKRICKDLENLSQIQ: 500
                :     * * *       *     *     *     *     ***           *    *     *  *  *   **        *   * * *    *:
8hf0_A_1     197:GNIITVSDTKEMENVMLY-----ATKPTEVMVSFPHQ----EQVLTVTRLISAEIEKFYVSLDLMNIGVQPIRRSKSLQCLRDPSKKSFVKQLFNDFLYQ: 287
SecStr          :SEEE   SHHHHHHHHTT-----      EEEEE   ----    HHHHHHHHHHHHHHHHHHT   S    EE TTSSSEE  HHHHHHHHHHHHHHHH:    
ExpBur          :bbbbebeeeebeeebeee-----beebeeeeeebeee----eeeeebbeebeebbeebbeebeeeebeebeeeeeeebeeeeeeeebeebbebbebbeeb:    
Contact         :                                                                          b      b         b        

queryA       501:NREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD--FFSNVRAAGFDEIEQDLT----QRFEEKL: 594
                :  * *       *         *       *    *              **   *  *       * *             *          ***    :
8hf0_A_1     288:MKEYGIYAASIAIISL---IVEFDIKRRQAETLSVKLM---------HRTALTLCEKIRHL-LVQKLQDMTYDDDDDNVNTEEVIMNFSTPKVQRF----: 370
SecStr          :HHHH HHHHHHHHHHH---HHHHHHHHHH  SHHHHHH---------HHHHHHHHHHHHHH-HHHHHHHHTTS   HHHHHHHHHHHSS HHHHHH----:    
ExpBur          :beebbbbbbbbbbebb---bbbbeeeeeebebeebeeb---------beebbebbeebeee-beeebeeebeeeeeeeebbeebbbebbebbbeeb----:    

queryA       595:QELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTR----ALVDALKNWIEGNPKL-SFLKPGILTGRGKTNQNTGMTLPA--QKCILDAFKA: 687
                :  * *         **  * *                 **  *         * * *   * *   * *    **          *    **     *  :
8hf0_A_1     371:--LMSLKVSFADKDPK--DIC--------------CLVFVERRYTCKCIYGLLLNYIQSTPELRNVLTPQFMVGRNNISPDFESVLERKWQKSAIQQFR-: 451
SecStr          :--HHHHHHHHSS  TT--T  --------------EEEE SSHHHHHHHHHHHHHHHTT SSSTTT    B   SS   S SS  S       HHHHHH-:    
ExpBur          :--bebbeeebeeeeee--ebb--------------bbbbbeeebbbbbbbbbbeebbebbeebeebbebbbebeeeebbebeeeeeeeeeeeebbebbe-:    
Contact         :                                        bbb                              bb                         

queryA       688:SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSN: 744
                : *  *  *  **  ****   ** *     *       *  ** *    *  * *  :
8hf0_A_1     452:DGNANLMICSSVLEEGIDVQACNHVFILDPVKTFNMYVQSKGRARTTEAKFVLFTAD: 508
SecStr          :TTS SEEEESSSSSSSS     SEEEE S   SHHHHHHHHHH  STT EEEEEEEG:    
ExpBur          :eeebbbbbbbeebbbbbebeebebbbbbbebeebbbbebbeebbbeeebebbbbbbe:    
Contact         :         bbb

Protein Model on 8hf0_A_1_G_1 (TEMPLATE: 8hf0 )

Input Residue Numbers for Focused Sites