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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [647 aa] | Antiviral innate immune response receptor RIG-I :DDX58_HUMAN | |
2 | b | F 1 (Y) | polymer(polyribonucleotide) | p3dsRNA24b | 298N 299Q 300I 301P 325S 326G 347T 349Q 353N 418K 507Q 510E 511Q 514V 518K 546R 635K 637R 662T 697T 698S 853F 854S 906S (identity: 100.0 %/94.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8g7t_A_1 identity=94.7% |
queryA 241:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 340 :****************************************************************************************************: 8g7t_A_1 241:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 340 SecStr : SHHHHSSTTTTTTS B B SSHHHHHHHHHHHHHHHT TT EEE SSHHHHHHHHHHHHTTTTTTT EE TTTSSSS HHHHHTT: ExpBur :eeeeebbebbbeebeeeebbbbbbebeebbbbbbbbbbbebbeeeeeeeebbbbbbbeeeeebeebeeebeeebeeeeeeeebbbeeebeeeeeeebbee: Contact : bbbb bb queryA 341:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 440 :****************************************************************************************************: 8g7t_A_1 341:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 440 SecStr : SEE HHHHHHHHHHSSS SGGG SEEEETTGGGTTSS HHHHHHHHHHHHHTTT S EEE BS S SHHHHHHHHHHHHHHTT B : ExpBur :bbbbbbbbebbbebbeeeebeebeebebbbbbbbbebeeeeebbebbbebbebeeeeeeeeebbbbbbbebbbbeebeeeeebbeebbebbbbbbbbbbb: Contact : b b b b queryA 441:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 540 :****************************************************************************************************: 8g7t_A_1 441:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 540 SecStr : TTHHHHTTS EEEEEE S HHHHHHHHHHHHHHHHHTTS TTTGGG S TTSHHHHHHHHHHHHHTTS TTSSSHHHHHHHHHH: ExpBur :ebeebeeebeebebeeeeeeeebeebeeeebeebbbebbeebbebbeeebeebeeebeeeeeebbeeebeebbeebbebbbebeeeeeeebeebbbbbbb: Contact : b bb b b queryA 541:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 640 :****************************************************************************************************: 8g7t_A_1 541:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 640 SecStr :HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHH HHHHHHHHHHHTTHHHHHHHTT TT HHHHHHHHHHHHHHHH TT EEE S TTST: ExpBur :bbebbeebbebbebbebbbbebbbeebeebbeebeeebebebbeebbeebeeebeebeebbeeeebebbbbebbbebbeebbeeeeebebbbbbeeeebb: Contact : b b b queryA 641:DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 740 :********************** ********** ************* *******************: 8g7t_A_1 641:DALKNWIEGNPKLSFLKPGILTXXXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVXXXXXXIAQCNLVILYEYVXXXIKMIQTRGRGRARGSKCFL: 740 SecStr :THHHHHHTT GGGTT B --------------------------- S EES ------ EEEES --- SS EEEE: ExpBur :ebbeebbeebeebeebeebeee---------------------------eeebebbbee------ebebebbbbbbee---eeeebbeeeeeeeebebbb: Contact : b bb queryA 741:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 840 :****************************************************************************************************: 8g7t_A_1 741:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 840 SecStr :EESSHHHHHHHHHHHHHHHHHHHHHHHHHTS HHHHHHHTHHHHHHHHHHHHH B S EEEESSS EEEETTSEEESSSS EEE SGGGG: ExpBur :bbeeeebbeebeeeeeeeebbeebbeebeeeeeeebeeebeebbeeebeeeeeeeeeeeeeeeeebbbbbbbbbbebbebeebbbbeeeebbbbeeebee: queryA 841:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM: 923 :***********************************************************************************: 8g7t_A_1 841:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM: 923 SecStr :SEE B SS SS EEE EE SSS B EEEEESSSSEEEEE GGGEEEE SSS EE SSTTT B EE TTT : ExpBur :bbeeeebeeeeeeeebebebbbbbeeeebebebbbbbeeeeeebbbbebebbbbbbeeeeebeeeeebeebebeeeebeeeee: Contact : bb b |