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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [1561 aa] | Dicer-2, isoform A :A1ZAW0_DROME | |
2 | b | E 1 (E) | polymer(polyribonucleotide) | RNA (5'-R(P*GP*AP*GP*AP*CP*UP*UP*GP*G)-3') | 378S(T) 379K(G) 380Q(H) 381H 382P 480R 719G(K) (identity: 42.9 %/29.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8hf1_A_1 identity=29.7% |
queryA 242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF--PQGQKGK-VVFFANQIPVYEQQKSVFSKYFE-RHGYRV--TGISGATAENVPVE: 335 :*** *** * * * *** ***** * * * ** * * ** * * * * *: 8hf1_A_1 6:KPRGYQLRL-VDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGGKRALFMCNTVELARQQAMAVRRCTNFKVGFYVGEQGVDDWTRGMWSDE: 104 SecStr : HHHHHH-HHHHHHS EEEE SSHHHHHHHHHHHHHTTTSSSS GGGT EEEEEESSHHHHHHHHHHHHHH SS EEEE GGGTGGG HHHHHHH: ExpBur :eeeebbeeb-beebeebbbbbbbebeebbbebbbbbbeebeeebeeeeeeebebbbbbbeeeebbebbbebbeeebebebbbbbeeeebeeeeeeebeeb: queryA 336:QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYN--MIMFNYLDQKLGGSSGPLPQVIGLTAS----------------------: 411 : * * * * ** * **** ** * * * ** * *** : 8hf1_A_1 105:--IKKNQVLVGTAQVFLDMVTQ-TYVALSSLSVVIIDECHHGTGHHPFREFMRLFTIANQT------KLPRVVGLTGVLIKGNEITNVATKLKELEITYR: 195 SecStr :--HHH SEEEEEHHHHHHHHHT-TSS GGGEEEEEESSGGG TT HHHHHHHHTTTS ST------T EEEEEES S SS SSHHHHHHHHHHHTT: ExpBur :--beebbbbbbbbebbbebbbb-eebebebbbbbbbbbbbbbeeeeebbbbbbbbbeeeee------eebebbbbbbbbbeeeebeebeeebeebbbbbb: Contact : bbbbb bbb queryA 412:---VGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVES-RISDKFKYIIAQLMRDTESL-------AKRICKDLENLSQIQ: 500 : * * * * * * * *** * * * * * ** * * * * *: 8hf1_A_1 196:GNIITVSDTKEMENVMLY-----ATKPTEVMVSFPHQ----EQVLTVTRLISAEIEKFYVSLDLMNIGVQPIRRSKSLQCLRDPSKKSFVKQLFNDFLYQ: 286 SecStr :S EE SHHHHHHHHHH----- EE EEE ---- HHHHHHHHHHHHHHHHHHT S EE SSSSSEE HHHHHHHHHHHHHHHH: ExpBur :bbbbbbeeeebeeebeeb-----beebeeeebebeee----eeeeebbeebeebbeebbeebeeeebeebeeebbeebeeeeeeeebeebbebbebbbeb: Contact : b queryA 501:NREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD--FFSNVRAAGFDEIEQDLT----QRFEEKL: 594 : * * * * * * ** * * * * * *** : 8hf1_A_1 287:MKEYGIYAASIAIISL---IVEFDIKRRQAETLSVKLM---------HRTALTLCEKIRHL-LVQKLQDMTYDDDDDNVNTEEVIMNFSTPKVQRF----: 369 SecStr :HHHHHHHHHHHHHHHH---HHHHHHHHHH SHHHHHH---------HHHHHHHHHHHHHH-HHHHHHTTGGG S HHHHHHHHHHHSS HHHHHH----: ExpBur :beebbbbbbbbbbebb---bbbbeeeeeeeebeebeeb---------beebeeebeebeee-beeebeebeeeeeeeeebbbebbeebbbebbeeb----: queryA 595:QELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTR----ALVDALKNWIEGNPKL-SFLKPGILTGRGKTNQNTGMTLPA--QKCILDAFKA: 687 : * * ** * * ** * * * * * * * * ** * ** * : 8hf1_A_1 370:--LMSLKVSFADKDPK--DIC--------------CLVFVERRYTCKCIYGLLLNYIQSTPELRNVLTPQFMVGRNNISPDFESVLERKWQKSAIQQFR-: 450 SecStr :--HHHHHHHTSS GG--G --------------EEEE SSHHHHHHHHHHHHHHHTT SSSTTT EEE SS S SS S S HHHHHH-: ExpBur :--bebbeebbeeeeee--ebb--------------bbbbbeeebbbbbbbbbbeebbebbeebeebbebbbbbbeeebbebeeeeeeeeeeeebbebbe-: queryA 688:SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSN: 744 : * * * ** **** ** * * * ** * * * * : 8hf1_A_1 451:DGNANLMICSSVLEEGIDVQACNHVFILDPVKTFNMYVQSKGRARTTEAKFVLFTAD: 507 SecStr :HTS EEEESSSTTSS SEEEE S HHHHHHHHHH STT EEEEEEES: ExpBur :eeebbbbbbbebbbeebebeebebbbbbbebebbbbbbbbbebbbeeebebbbbbbe: Contact : b |