Protein Model on 5f9h_A_1_E_1
(TEMPLATE: 
5f9h
)Protein Model on 5f9h_A_1_E_1
(TEMPLATE: 5f9h
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DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [646 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | |
| 2 | b | E 1 (E) | polymer(polypeptide(L)) [638 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | 418K 419N 420T 421D 446L 450E 451Q 454Y 455K 457Q 458K 459F 460F 461R 462K 616F 620E 621E 623H 624L 734R 737K 739F 752Q 755M 756Y 759K 763D 767R (identity: 100.0 %/94.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5f9h_A_1 identity=94.7% |
queryA 241:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 340
:****************************************************************************************************:
5f9h_A_1 11:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 110
SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHTS TT EEEE SSHHHHHHHHHHHHHHHTTTT EEEE TTT TTS HHHHHHT:
ExpBur :eeeeebbebbbebbeeeebbbbbbebebebebbbbbbbbebbeebeeeeebbbbbbbeeeebbeebeeebeeebeeeeeebebbbeeebeeeebeeebee:
queryA 341:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 440
:****************************************************************************************************:
5f9h_A_1 111:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 210
SecStr : SEEEE HHHHHHHHHHTSS GGG SEEEEETGGG STTSHHHHHHHHHHHHHHSSS EEEEEES TT SSHHHHHHHHHHHHHHTT EEE:
ExpBur :bbbbbbbbebbbebbeeeebeebeebebbbbbbbbebeeeebbbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbbbb:
Contact : bbbb
queryA 441:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 540
:***************************************************** ***************************************:
5f9h_A_1 211:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLXXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 310
SecStr : TTHHHHHTTS EEEEEE S SHHHHHHHHHHHHHHHHTTSS -------- TTSHHHHHHHHHHHHHHHH SSTTTHHHHHHHHHH:
ExpBur :ebeeeeeebeeebeebebeeeebeebeeeebeebbbbbbbebeebbeeeeeee--------eeebeeebeeebeebeeebbeeeeeeeeebbbebbbbbb:
Contact : b bb bb bbbbbb
queryA 541:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 640
:************************************* **************************************************************:
5f9h_A_1 311:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAXFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 410
SecStr :HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHS - TTHHHHHHHHHHHHHHHHHHHT GGG HHHHHHHHHHHHHHHH TT EEEE SSHHHH:
ExpBur :bbebbeebbbbbebbeebbbebbbeebeebbeeeeee-ebebbeebbeebeeeeeebbebbeeeebebebbeebbebbeebbeeeeebebbbbbeeeebb:
Contact : b bb bb
queryA 641:DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 740
:************************ ***************************************************:
5f9h_A_1 411:DALKNWIEGNPKLSFLKPGILTGRXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 510
SecStr :HHHHHHHHT STTTT EEEE ------------------------- SEEEES SSS S S SEEEEES HHHHHHHGGGG STT EEEE:
ExpBur :ebbbebbeebeebeebebbeeeee-------------------------eebbebbbeeebbeeeeeebebbbbbbbeeebbebbbbbbbbbeeebebbb:
Contact : b b b
queryA 741:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 840
:****************************************************** ********************************************:
5f9h_A_1 511:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQXXPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 610
SecStr :EES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHH -- EEEEETTT EEEETTSEEEETTTEEEE STTTTT:
ExpBur :bbeeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeebeee--eeeeeeeeebbbbbbbbbbebbebeebbbbeeeebbbeeeebee:
Contact : b bb b b b
queryA 841:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
:**********************************************************************************:
5f9h_A_1 611:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692
SecStr :TEEEEE SS EETTEEEEEEEEE STT EEEEEEEETTEEEEEE GGGEEEEETTT EE SSGGG S EE TT :
ExpBur :bbeeeebeeeeeeeebeeebbbbbeeeebebebbbbbebeeeebbbbebebbbbbbeeeeebeeeeebeebebeeeebeeee:
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[assembly_id:1]
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