[pdbjlvh2]Protein Model on 3zd6_A_1_D

Protein Model on 3zd6_A_1_D_1 (TEMPLATE: 3zd6 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [632 aa]	PROBABLE ATP-DEPENDENT RNA HELICASE DDX58 :DDX58_HUMAN
2	b		D 1 (A)	non-polymer(ZN)	ZINC ION	810C 813C 864C 869C (identity: 100.0 %/91.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3zd6_A_1 identity=91.7%

queryA       236:NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVE: 335
                :*************************************************** ****************** *****************************:
3zd6_A_1       7:NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPNGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVE: 106
SecStr          :  SS     HHHHHHHHHHHTT  EEEE  SSHHHHHHHHHHHHHHHHS  SS    EEEE SSHHHHHHHHHHHHHHHHTTT  EEEE TTTGGGS HH:    
ExpBur          :ebeeeeeeeebbebbbebbeeeebbbbbbeeeebbbbbbbbbbeebbeeeeeeeebbbbbbbeeeebbeebeebbeeebeeeeeebebbbeeeeeeeebb:    

queryA       336:QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLD: 435
                :****************************************************************************************************:
3zd6_A_1     107:QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLD: 206
SecStr          :HHHHT SEEEE HHHHHHHHHHTSS  GGG SEEEETTGGG STT HHHHHHHHHHHHHHTT  S   EEEEEES    TT SSHHHHHHHHHHHHHHHT:    
ExpBur          :ebbeebbbbbbbbebbbebbeeeebebbeebebbbbbebeebeeeeebbebbbebbebeeeeeeeeebbbbbbbeebebeebeeeeebbeebbebbbbbb:    

queryA       436:ASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRIC: 535
                :**************************************************************************************          ****:
3zd6_A_1     207:ASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMXXXXXXXXXXSRIC: 306
SecStr          : SEEE  STTHHHHTTTS   EEEEEE    S  SSHHHHHHHHHHHHHHHHHTTSSGGGG S  S  TTSHHHHHHHHHHHHH  ---------- HHH:    
ExpBur          :bbbbbebeeeeebbeeeeeeeeeebeebeebeebebeebbbebbebbbebbeeebeebeebbeeeeeeebeeebbebbeebeeeee----------eeeb:    

queryA       536:KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVK: 635
                :****************************************************************************************************:
3zd6_A_1     307:KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVK: 406
SecStr          :HHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHSS   HHHHHHHHHHHHHHHHHHHHHH GGGS HHHHHHHHHHHHHHHH SS  EEEE S:    
ExpBur          :ebbebbbbbbeebbbbbbbbebbebbbbbeebeebbeebeeeeeeeebeebbeebeeeeeebbebbeeeebebebbebbbebbeebbeeeeebebbbebe:    

queryA       636:TRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG: 735
                :**************************                             ***** *****     ****************          ***:
3zd6_A_1     407:TRALVDALKNWIEGNPKLSFLKPGILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHNILILTSVADXXXXXAQCNLVILYEYVGNVIXXXXXXXXXXARG: 506
SecStr          : HHHHHHHHHHHHT STTTT  EE  -----------------------------    EEEES  -----   SEEEEES S    ----------  S:    
ExpBur          :bebbbebbeebbeebeebeebbbbee-----------------------------eeeebebeeee-----eeeebbbbbbbeeeee----------eee:    

queryA       736:SKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLG: 835
                :****************************************************************************************************:
3zd6_A_1     507:SKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLG: 606
SecStr          : EEEEEES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHHTT      B   EEEEETTT  EEEEGGGEEEETTTEEEE S:    
ExpBur          :ebbbbbbeeeeebeeeeeeeeeeebbeebbeebeeeebeebeeebeeebeeebeebeeeeeeeeeeeeeebbbbbeeeebebbebeebebbeeeebbbee:    
Contact         :                                                                          b  b                      

queryA       836:DAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPA: 921
                :**************************************************************************************:
3zd6_A_1     607:DAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPA: 692
SecStr          :HHHHTTEE  B SS  B SSSEEEEEEEESSTTT  EEEEEEEETTEEEEEE GGGEEEEETTT  EEE S TTT  B   B    :    
ExpBur          :eebeeebeeeebeeebeeeebeeebebbbeeeebeeebbbbbebeeeebbbbebebbbbebeeeeeeeeeeebeebebeeeeeeee:    
Contact         :                            b    b

Protein Model on 3zd6_A_1_D_1 (TEMPLATE: 3zd6 )

Input Residue Numbers for Focused Sites