[pdbjlvh2]Protein Model on 8hf1_A_1_C

Protein Model on 8hf1_A_1_C_1 (TEMPLATE: 8hf1 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [1561 aa]	Dicer-2, isoform A :A1ZAW0_DROME
2	b		C 1 (C)	polymer(polypeptide(L)) [126 aa]	LD06392p :Q9VLW8_DROME	468S 471F(L) 472K(M) 473Y(N) 514V(I) 521M(V) 527D(R) 534I(S) 537A(L) 549N(R) 550D(T) 553I(T) 554I(L) 556E 557H(K) 559R 560M(H) 561K(L) 564L(V) 565D(Q) 671T(F) 672G(E) 673M(S) (identity: 13.0 %/29.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8hf1_A_1 identity=29.7%

queryA       242:KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF--PQGQKGK-VVFFANQIPVYEQQKSVFSKYFE-RHGYRV--TGISGATAENVPVE: 335
                :*** *** *        * *   *** *****  *        *  *    **   *  *      **            *  *   *    *      *:
8hf1_A_1       6:KPRGYQLRL-VDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGGKRALFMCNTVELARQQAMAVRRCTNFKVGFYVGEQGVDDWTRGMWSDE: 104
SecStr          :   HHHHHH-HHHHHHS EEEE  SSHHHHHHHHHHHHHTTTSSSS GGGT  EEEEEESSHHHHHHHHHHHHHH SS EEEE GGGTGGG  HHHHHHH:    
ExpBur          :eeeebbeeb-beebeebbbbbbbebeebbbebbbbbbeebeeebeeeeeeebebbbbbbeeeebbebbbebbeeebebebbbbbeeeebeeeeeeebeeb:    

queryA       336:QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYN--MIMFNYLDQKLGGSSGPLPQVIGLTAS----------------------: 411
                :     *     * *         *   **     * ****     **    *  *    *        ** * ***                        :
8hf1_A_1     105:--IKKNQVLVGTAQVFLDMVTQ-TYVALSSLSVVIIDECHHGTGHHPFREFMRLFTIANQT------KLPRVVGLTGVLIKGNEITNVATKLKELEITYR: 195
SecStr          :--HHH SEEEEEHHHHHHHHHT-TSS GGGEEEEEESSGGG  TT HHHHHHHHTTTS ST------T  EEEEEES S  SS  SSHHHHHHHHHHHTT:    
ExpBur          :--beebbbbbbbbebbbebbbb-eebebebbbbbbbbbbbbbeeeeebbbbbbbbbeeeee------eebebbbbbbbbbeeeebeebeeebeebbbbbb:    

queryA       412:---VGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVES-RISDKFKYIIAQLMRDTESL-------AKRICKDLENLSQIQ: 500
                :     * * *       *     *     *     *     ***           *    *     *  *  *   **        *   * * *    *:
8hf1_A_1     196:GNIITVSDTKEMENVMLY-----ATKPTEVMVSFPHQ----EQVLTVTRLISAEIEKFYVSLDLMNIGVQPIRRSKSLQCLRDPSKKSFVKQLFNDFLYQ: 286
SecStr          :S EE   SHHHHHHHHHH-----    EE  EEE   ----    HHHHHHHHHHHHHHHHHHT   S    EE SSSSSEE  HHHHHHHHHHHHHHHH:    
ExpBur          :bbbbbbeeeebeeebeeb-----beebeeeebebeee----eeeeebbeebeebbeebbeebeeeebeebeeebbeebeeeeeeeebeebbebbebbbeb:    
Contact         :                                                            b  bbb                                  

queryA       501:NREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD--FFSNVRAAGFDEIEQDLT----QRFEEKL: 594
                :  * *       *         *       *    *              **   *  *       * *             *          ***    :
8hf1_A_1     287:MKEYGIYAASIAIISL---IVEFDIKRRQAETLSVKLM---------HRTALTLCEKIRHL-LVQKLQDMTYDDDDDNVNTEEVIMNFSTPKVQRF----: 369
SecStr          :HHHHHHHHHHHHHHHH---HHHHHHHHHH  SHHHHHH---------HHHHHHHHHHHHHH-HHHHHHTTGGG S HHHHHHHHHHHSS HHHHHH----:    
ExpBur          :beebbbbbbbbbbebb---bbbbeeeeeeeebeebeeb---------beebeeebeebeee-beeebeebeeeeeeeeebbbebbeebbbebbeeb----:    
Contact         :             b      b     b      b  b           bb  bb bb bbb  bb                                   

queryA       595:QELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTR----ALVDALKNWIEGNPKL-SFLKPGILTGRGKTNQNTGMTLPA--QKCILDAFKA: 687
                :  * *         **  * *                 **  *         * * *   * *   * *    **          *    **     *  :
8hf1_A_1     370:--LMSLKVSFADKDPK--DIC--------------CLVFVERRYTCKCIYGLLLNYIQSTPELRNVLTPQFMVGRNNISPDFESVLERKWQKSAIQQFR-: 450
SecStr          :--HHHHHHHTSS  GG--G  --------------EEEE SSHHHHHHHHHHHHHHHTT SSSTTT  EEE   SS   S SS  S  S    HHHHHH-:    
ExpBur          :--bebbeebbeeeeee--ebb--------------bbbbbeeebbbbbbbbbbeebbebbeebeebbebbbbbbeeebbebeeeeeeeeeeeebbebbe-:    
Contact         :                                                                                 bbb                

queryA       688:SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSN: 744
                : *  *  *  **  ****   ** *     *       *  ** *    *  * *  :
8hf1_A_1     451:DGNANLMICSSVLEEGIDVQACNHVFILDPVKTFNMYVQSKGRARTTEAKFVLFTAD: 507
SecStr          :HTS  EEEESSSTTSS      SEEEE S    HHHHHHHHHH  STT EEEEEEES:    
ExpBur          :eeebbbbbbbebbbeebebeebebbbbbbebebbbbbbbbbebbbeeebebbbbbbe:

Protein Model on 8hf1_A_1_C_1 (TEMPLATE: 8hf1 )

Input Residue Numbers for Focused Sites