[pdbjlvh2]Protein Model on 8g7v_A_1_C

Protein Model on 8g7v_A_1_C_1 (TEMPLATE: 8g7v )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [647 aa]	Antiviral innate immune response receptor RIG-I :DDX58_HUMAN
2	b		C 1 (C)	polymer(polypeptide(L)) [618 aa]	Antiviral innate immune response receptor RIG-I :DDX58_HUMAN	416D 418K 753I 756Y 789F 790I 794Q (identity: 100.0 %/94.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8g7v_A_1 identity=94.7%

queryA       241:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 340
                :****************************************************************************************************:
8g7v_A_1     241:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 340
SecStr          :    SHHHHHSHHHHTT  B  B   HHHHHHHHHHHHHHHHTT  TT     EE  SSHHHHHHHHHHHHTTTTTTT       TTTSSSS SHHHHTT:    
ExpBur          :eeeeebbebbbeebeeebbbbbbbebbebbbbbbbbbbeebbeeeeeeeebbbbbbbeeeeebeebeeebeeebeeeeeebebbbeeeeeeeebeebbee:    

queryA       341:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 440
                :****************************************************************************************************:
8g7v_A_1     341:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 440
SecStr          : SS    HHHHHHHHHHSSS  GGG SBEEEESGGG SSSSTTHHHHHHHHHHHTTT      B  EEBS     S  SHHHHHHHHHHHHHHHT  B  :    
ExpBur          :bbbbbbbbebbbebbeeeebeebeebebbbbbebbebeeeeebbebbbebbebeeeeeeeeebbbbbbbebbbbeebeeeeebbeebbebbbbbbbbebb:    
Contact         :                                                                           b b                      

queryA       441:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 540
                :****************************************************************************************************:
8g7v_A_1     441:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 540
SecStr          :   S HHHHHSS    EEEEEE    S  HHHHHHHHHHHHHHHHHHTT TTGGGS       TTSHHHHHHHHHHHHHTT    TTSSSHHHHHHHHHH:    
ExpBur          :ebeebeeebeeeebebeeeeeebeebeeeebeebbbebbeebbebbeeebeebeeebeeeeeebeeeebbebbeebbeebbeeeeeeeeebeebbbbbbb:    

queryA       541:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 640
                :****************************************************************************************************:
8g7v_A_1     541:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 640
SecStr          :HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHH   HHHHHHHHHHHHHHHHHHHHHT TT   HHHHHHHHHHHHHHHH TT  EEEEESSSTTT:    
ExpBur          :bbbbbeebbebbebbeebbbebbbeebeebbeebeeeeeeebbeebbeebeebbeebbebbeeeeeebebbebbbebbeebbeeeeebebbbbbeeeebb:    

queryA       641:DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 740
                :**********************                           **********      *************   *******************:
8g7v_A_1     641:DALKNWIEGNPKLSFLKPGILTXXXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVXXXXXXIAQCNLVILYEYVXXXIKMIQTRGRGRARGSKCFL: 740
SecStr          :THHHHHHTT SS TT       ---------------------------  SEEEES  ------    S EEEES  ---       SSS     EEEE:    
ExpBur          :ebbeebbeebeebeebeebeee---------------------------eeebebbbee------ebebebbbbbbbe---eebebbeeeeebeebebbb:    

queryA       741:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 840
                :****************************************************************************************************:
8g7v_A_1     741:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 840
SecStr          :EESSHHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHHT         S  EEEESSS  EEEETTSEEESSSS EEE  SGGGG:    
ExpBur          :bbeeeebbeebeeeeeeeebbeebbeebeeeeeeebeeebeeebeeebeebeeeeeeeeeeeeeebbbbbbbbbbebbebeebbbbeeeebbbeeeebee:    
Contact         :            b  b                                bb   b                                              

queryA       841:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM: 923
                :***********************************************************************************:
8g7v_A_1     841:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM: 923
SecStr          :SEE  B SS    TT  EEE  EE SSS   B EEEEE SSSEEEEE GGGEEEE SSS  EE   STTTS S  EE  TTT :    
ExpBur          :bbeeeebeeeeeeeebebebebbbeeeebebebbbbbebeeeebbbbebebbbbbeeeeeebeeeeebeebebeeeebeeeee:

Protein Model on 8g7v_A_1_C_1 (TEMPLATE: 8g7v )

Input Residue Numbers for Focused Sites