[pdbjlvh2]Protein Model on 8dg5_A_1_C

Protein Model on 8dg5_A_1_C_1 (TEMPLATE: 8dg5 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [1635 aa]	Endoribonuclease Dcr-1 :DCR1_DROME
2	b		C 1 (K)	polymer(polypeptide(L)) [252 aa]	Loquacious, isoform B :Q9VJY9_DROME	481D(T) 482T(H) 485L(F) (identity: 0.0 %/23.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8dg5_A_1 identity=23.7%

queryA       241:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV-VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 339
                :* **  * **   *    *****      * *  *               * * *             *           **           *      :
8dg5_A_1      15:FTPRDFQVELLATAYE-RNTIICLGHRSSKEFIALKLLQELSRR--ARRHGRVSVYLSCEVGTSTEPCSIYTMLTHLTDLRV--WQEQPDMQIPFDHCWT: 109
SecStr          :     HHHHHHHHHHH-S        HHHHHHHHHHHHHHHHHH--HTTTT EEE   SS SS SS  HHHHHHHHSSS   --    TT    SS  ST:    
ExpBur          :bbebbbbbbbbbbbee-ebbbbbbbbbebbbbbbbbbbbbbbbe--bbeeeebbbbbbeebeeeeeebbbebbbeebbbbeb--bbbeeebeeeeeeebe:    

queryA       340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 439
                :     ** *      *       **   *     **       *  *                *   **      *        *       * *  ** :
8dg5_A_1     110:DYHVSILRPEGFLYLLETREL-LLSRVELIVLEDCHDSAV---YQRIRPLFENHIMPAPPADRPRILGL-----AGPLHSAGCELQQLSAMLATLEQSVL: 200
SecStr          :T SB    HHHHHHHHHTTSS- SSSEEEE B   SSHHH---HHHHHHHHSSSSSSS TTT  B  B -----   SSSSSS STTHHHHHHHHHHHTT:    
ExpBur          :ebebbbbebebbbebbeeeeb-eeeebbbbbbbbbbbeeb---beebeebbeebeeebeeeebbebbbb-----bbbbbbbbbebeebeebbeebbeebe:    

queryA       440:ATVKHNLEELEQVVY--KPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKA: 537
                :              *   *            *      *       *                                                     :
8dg5_A_1     201:CQIESASDIVTVLRYCSRPHEYIVQCAPFEMDELSLVLADVLNTHKSF----------------------------------------------------: 248
SecStr          :      STTTTTTSSS   EEEEEE       HHHHHHHHHHHHHHHH----------------------------------------------------:    
ExpBur          :bebbbbbebbbbbbbeeebebbbbbbeebeebebbebbbbbbbbebbe----------------------------------------------------:    
Contact         :                                           bb  b                                                    

queryA       538:LFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVK--: 635
                :                                                                                                    :
8dg5_A_1     249:--------------------------------------------------------------------------------------------------LL: 250
SecStr          :--------------------------------------------------------------------------------------------------HH:    
ExpBur          :--------------------------------------------------------------------------------------------------be:    

queryA        -1:----------------------------------------------------------------------------------------------------:  -1
                :                                                                                                    :
8dg5_A_1     251:DHRYDPXXXXXXXXXXXXXXXXXXXXXDPLNVINSLLVVLHEMGPWCTQRAAHHFYQCNEKLKVKTPHERHYLLYCLVSTALIQLYSLCEHAFHRHLXXX: 350
SecStr          :T     --------------------- TTHHHHTTHHHHHHT HHHHHHHHHHHHHHHHTTTTT SSSHHHHHHHHHHHHHHHHHHHHHHHHHH  ---:    
ExpBur          :eeeeee---------------------ebeebbebbbebbbbbbbbbbbbbbeebeeebeeebeebeeeeeeebbeebbebbeebeebbeebbeeee---:    
Contact         :b bbb                                               b  bb  b  b      b bb  bb  b  bb  b   b         

queryA        -1:----------------------------------------------------------------------------------------------------:  -1
                :                                                                                                    :
8dg5_A_1     351:XXSRQTIERYSSPKVRRLLQTLRCFKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX: 450
SecStr          :-- HHHHHHSS HHHHHHHHHHHS  --------------------------------------------------------------------------:    
ExpBur          :--eeebbeeebbbbbebbbebbeebe--------------------------------------------------------------------------:    

queryA       636:------------------------------------------------------TRALVDALKNWIEGNPKLSFLKPGILTGR----GKTNQNTGMTLPA: 677
                :                                                       * *   *       * * **     * *                 :
8dg5_A_1     451:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLCALIYCNQNHTARVLFELLAEISRRDPDLKFLRCQYTTDRVADPTTEPKEAELEHRR: 550
SecStr          :-----------------------------------------      B SSSSHHHHHHHHHHHHHHHSGGGTT    B      BTTB HHHHHHHHHH:    
ExpBur          :-----------------------------------------ebbbbbbbeeebbbebbeebbbebbeebeebeebebbbbbeeeeeeeeeeeeeeeeeee:    

queryA       678:QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTS: 743
                :*   *  *    * * ** ***  ****   ****             *  ** **       *  :
8dg5_A_1     551:QEEVLKRFRMH-DCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAYHVILVA: 615
SecStr          :HHHHHHHHHTT-S    B  GGGTTT      SEEEESS  SSHHHHHHHHTT  SSS EEEEEE :    
ExpBur          :bbebbeebbee-ebbbbbbbebbbbebebeebbbbbbbbbbebbbbbbbbbbbbeeeebebbbbbb:

Protein Model on 8dg5_A_1_C_1 (TEMPLATE: 8dg5 )

Input Residue Numbers for Focused Sites