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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [683 aa] | Interferon-induced helicase C domain-containing protein 1 :IFIH1_MOUSE | |
2 | b | C 1 (Y) | polymer(polyribonucleotide) | RNA (5'-R(P*UP*CP*UP*CP*CP*UP*CP*GP*GP*CP*UP*UP*GP*AP*C)-3') | 298N 299Q(K) 300I(V) 325S 326G 347T 349Q 350I 353N 514V(I) 518K 546R 635K 636T 637R 662T(I) 663G 668N(S) 697T 698S(T) 699V 827E 829C(M) 878K(V) 879Y(H) 880K 906S(K) (identity: 63.0 %/38.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7nic_A_1 identity=38.3% |
queryA 244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-QKGKVVFFANQIPVYEQQ-KSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341 :* ** * * ** *** *** *** *** * * ** * * *** * ** * * ** * ** * * : 7nic_A_1 310:RPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQASESGKVIVLVNKVMLAEQLFRKEFNPYLKK-WYRIIGLSGDTQLKISFPEVVKSY: 408 SecStr : HHHHHHHTTTTSS EEE SSSSHHHHHHHHHHHHHHHHHHTT EEEEESSHHHHHHHHHHTHHHHHTT-TS EE SSS SS HHHHTTTT: ExpBur :eebbebbbeebbeeebbbbbbebebebbebbbebbbebbeebeeeeeebbbbbbbebebbbebbbeebbeeebee-ebebebbbeeeeeeeebbebbeee: Contact : bbb bb queryA 342:DIIILTPQILVN---NLKKGTIPS--LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGS--------SGPLPQVIGLTASVGVGDAKNTDEALDYIC: 428 :* ** * *** * ** * ** * * * **** * * ** ** ** *** **** ***** *** ** ** * : 7nic_A_1 409:DVIISTAQILENSLLNLESGDDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLRNNDLKKQNKPAIPLPQILGLTASPGVGAAKKQSEAEKHIL: 508 SecStr :SEEEEEHHHHHHHHHHHHHTSS GGG SEEEESSGGG TT HHHHHHHHHHHHHHHHHHHHTT S EE EEES SS SSHHHHHHHHH: ExpBur :bbbbbbbebbbebbeeeeeeeeebbebeebbbbbbbbbbebeeebebbbbbbebbebbeebeebeeeeeeeeeebbbbbbbbbbbbeebeeeeebbebbb: Contact : b bb b queryA 429:KLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDK: 528 : ** *** * *** ** * * * * ** * **** **** * * : 7nic_A_1 509:NICANLDAFTIKTVKENLGQLKHQIKEPCKKFVIADDTRENPFKEKLLEIMASIQTYCQKSPMS----------DFGTQHYEQWAIQMEKKA----AKDG: 594 SecStr :HHHHTTT S STHHHHHHHS B EEEE TTTHHHHHHHHHHHHHHHT S---------- TTSHHHHHHHHHHHHHH----HHHT: ExpBur :ebbbbbbbeebbbbeeeeeebeeeeeebeeeebebeeeebeebbebbeebbeebbeebeeebee----------ebeeeebbebbeebbeeb----beee: Contact : b b queryA 529:DEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGF------------------------------DEIEQDLTQRFEEKLQELE: 598 : * * ****** ** * ** ** * * * ** * * * : 7nic_A_1 595:NRKDRVC------AEHLRKYNEALQINDTIRMIDAYSHLETFYTDEKEKKFAVLNXXXXXXXXXXXXXXXXXXXXXXSLKLDETDEFLMNLFFDNKKMLK: 688 SecStr : SSHHH------HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHH ---------------------- SHHHHHHHHHHHHHHHHH: ExpBur :eeebbbb------bbbbebbbbbbebbeebbbebbbebbeebbeebbebbebbee----------------------eeeebebbeebbeebeeebeebe: Contact : b queryA 599:SVSRDPSNENPKLEDLCFILQEEYHLNPETIT-ILFVKTRALVDALKNWIEGNPKLS--FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILI: 695 : * ** ** * * * * * *** ** ** * * * * * * ** ** * * * **: 7nic_A_1 689:KLAENPKYENEKLIKLRNTILEQFTRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVGVKAHHLIGAGHSSEVKPMTQTEQKEVISKFR-TGEINLLI: 787 SecStr :HHHS STTS SHHHHHHHHHHHHHHHHSS EEEE S SHHHHHHHHHHHH HHHHHHT EEE SS TT HHHHHHHHHHHH-HTS SEEE: ExpBur :eebeeeebbbebbeebeebbbebbeebeeebebbbbbeeebbbebbbebbeebeebeeeebebebbbbeeeeeebeebebeebbebbeebe-ebebbbbb: Contact : bbb bb b queryA 696:ATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSN-AGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH---EKFIR: 791 :** ** ** ** ** ** * * * * * * *** ** * * ** ** * * * *** * * * *** * ** : 7nic_A_1 788:ATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVTSSGSGVTEREIVNDFREKMKYKAINRVQNMKPEEYAHKILELQVQSILEKKMK: 887 SecStr :E HHHHS S EE BS HHHHHHHHT SSS EE EEEESSSTHHHHHHHHHHHHHHHHHHHHHHHTS HHHHHHHHHHHHHHHHHHHHHH: ExpBur :bbebbbbbbebeebbbbbbbebbeebbbbbbbbbbbebeebebbbbbbeeeebeeebeebeeebebbeebbeebeebeeeebeeebeebbeebbeeeeee: Contact : bbb queryA 792:DSQEKPKPVPDKENK-KLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPH-PKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKI: 889 : * * *** * * * *** * ** * * * * ** * * **: 7nic_A_1 888:VKRSIAKQYNDNPSLITLLCKNCSMLVCSGENIHVIEKMHHVNMTPEFKGLYIVRENXXXXXXXXXXQTNGEIIC---KCGQAWGTMMVHKGLDLPCLKI: 984 SecStr :HHTTSSSS SS B EEESSS EEE STTEEEETTTEEEE HHHHTT EEE ---------- S EEE ---SSS EEEEE BTTB EEE G: ExpBur :eeeeeeeeeeeeeeebebbbbbbeeebbbbeebebbeeeebbbeeeebeeebeeeee----------eeebebbb---ebbbbbbebbebeebebbbbeb: Contact : b b bbb queryA 890:ESFVVEDIATGVQTLYSKW: 908 : *** * **: 7nic_A_1 985:RNFVVNFKNNSPKKQYKKW:1003 SecStr :GGEE BSSS SST: ExpBur :ebbbbeeeeeeeeeebeeb: Contact : b |