Protein Model on 6gkm_A_1_C_1
(TEMPLATE: 
6gkm
)Protein Model on 6gkm_A_1_C_1
(TEMPLATE: 6gkm
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [689 aa] | Interferon-induced helicase C domain-containing protein 1 :IFIH1_MOUSE | |
| 2 | b | C 1 (Y) | polymer(polyribonucleotide) | RNA (5'-R(P*CP*UP*CP*UP*CP*CP*UP*CP*GP*GP*CP*UP*UP*G)-3') | 298N 299Q(K) 300I(V) 325S 326G 331N(K) 347T 349Q 353N 510E 546R 635K 636T 637R 662T(I) 663G 664R(A) 665G 668N(S) 678Q 697T 698S(T) 699V 827E 829C(M) 830H 878K(V) 879Y(H) 880K 906S(K) (identity: 63.3 %/38.2 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6gkm_A_1 identity=38.2% |
queryA 244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-QKGKVVFFANQIPVYEQQ-KSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
:* ** * * ** *** *** *** *** * * ** * * *** * ** * * ** * ** * * :
6gkm_A_1 310:RPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQASESGKVIVLVNKVMLAEQLFRKEFNPYLKK-WYRIIGLSGDTQLKISFPEVVKSY: 408
SecStr : HHHHHHHGGGGSS EEEE TTS HHHHHHHHHHHHHHHHHHTT EEEEESSSHHHHHHHHHTTHHHHTT-TS EEEE SSSSTTTTHHHHTTS :
ExpBur :eebbeebbeebbeeebbbbbbebebebeebbbebbbbbbeebeeeeeebbbbbbbbeebbbebbeeebbeeebee-ebebbebbeeeeeeeebeebbeee:
Contact : bbb bb b
queryA 342:DIIILTPQILVN---NLKKGTIPS--LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGS--------SGPLPQVIGLTASVGVGDAKNTDEALDYIC: 428
:* ** * *** * ** * ** * * * **** * * ** ** ** *** **** ***** *** ** ** * :
6gkm_A_1 409:DVIISTAQILENSLLNLESGDDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLRNNDLKKQNKPAIPLPQILGLTASPGVGAAKKQSEAEKHIL: 508
SecStr :SEEEEESHHHHHHHHHHHHSSS GGG SEEEES GGG TT TTHHHHHHHHHHHHHHHHHHHH S EEEEEES S SSHHHHHHHHH:
ExpBur :bbbbbbbebbbebbeeeeeeeeebbebeebbbbbbbbbbebeeeeebbbbbbebbebeeebeebeeeeeeeeeebbbbbbbbbbbbeebeeeeebbebbb:
Contact : b b b
queryA 429:KLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDK: 528
: ** *** * *** ** * * * * ** * **** **** * * :
6gkm_A_1 509:NICANLDAFTIKTVKENLGQLKHQIKEPCKKFVIADDTRENPFKEKLLEIMASIQTYCQKSPMS----------DFGTQHYEQWAIQMEKKA----AKDG: 594
SecStr :HHHHHTT S SSHHHHHHH EEEEEEE S HHHHHHHHHHHHHHHHHHT S---------- SSSSHHHHHHHHHHHHH----HHHT:
ExpBur :ebbbbbbbeebeebeeeeeebeeebeebeeeeeebeeeebeebeebbeebbeebbeebeeebee----------ebeeeebbebbeebbeeb----beee:
Contact : b
queryA 529:DEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGF------------DEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF: 616
: * * ****** ** * ** ** * * * ** * * * * ** ** * :
6gkm_A_1 595:NRKDRVC------AEHLRKYNEALQINDTIRMIDAYSHLETFYTDEKEKKFAVLNDSXXSLKLDETDEFLMNLFFDNKKMLKKLAENPKYENEKLIKLRN: 688
SecStr : TTTHHH------HHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHT -- HHHHHHHHHHHTTHHHHHHHHS GGG HHHHHHHH:
ExpBur :eeebbbb------bbbbebbbbbbebbeebbbebbbebbeebbeebeebbebbeeee--eeeeeebbeebbeebeeeeeebeeebeeeebbbbbbeebbe:
Contact : b
queryA 617:ILQEEYHLNPETIT-ILFVKTRALVDALKNWIEGNPKLS--FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI: 713
: * * * * *** ** ** * * * * * * ** ** * * * **** ** ** ** ** **:
6gkm_A_1 689:TILEQFTRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVGVKAHHLIGAGHSSEVKPMTQTEQKEVISKFR-TGEINLLIATTVAEEGLDIKECNIVI: 787
SecStr :HHHHHHHHSSS EEEE S SHHHHHHHHHHHH HHHHHTT EEEE S TTS HHHHHHHHHHHH-HTS SEEEE TTSSSSS S :
ExpBur :bbeebbeebeeebebbbbbeeeebbebbbebbeeeeebeeeebeeebbbbeeeeeeeeebebeebeebbeebe-ebebbbbbbbebbbbbbebeebbbbb:
Contact : bbb bbbb b b bbb
queryA 714:LYEYVGNVIKMIQTRGRGRARGSKCFLLTSN-AGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKK-----: 807
: * * * * * * *** ** * * ** ** * * * **** * * * *** * * :
6gkm_A_1 788:RYGLVTNEIAMVQARGRARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKILELQV-QSILEKKMKVKRSIAXXYNDNPSLIT: 886
SecStr : BS HHHHHHHHTT SSS EEEEEEESSS HHHHHHHHHHHHHHHHHHHHHHTS HHHHHHHHHHHHH-HHHHHHHHHHHHHH -- SS EE:
ExpBur :bbebbeebbbbbbbbbbbbeeebbbbbbbbeeeebeeebeebeeebeebeebbeebeebeeeebeeebeebbe-ebbeeeeeeeeeeee--eeeeeeebe:
queryA 808:LLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPK-PKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYS: 906
:*** * * * *** * ** * * * * * ** * * ** *** * :
6gkm_A_1 887:LLCKNCSMLVCSGENIHVIEKMHHVNMTPEFKGLYIVRENKALQKXXXDYQTNGEIIC---KCGQAWGTMMVHKGLDLPCLKIRNFVVNFKNNSPKKQYK: 983
SecStr :EEETTTTEEEEETTTEEEETTTEEEE HHHHTS EE STTT --- S EEE ---SSS EEEE BTTB B SSSEEEEETTT S:
ExpBur :bbbbbbeeebbebeebbbbeeeebbbebeebeeebeebebeeeee---eeeeebebbb---ebbbbbbebbebeeeebbbbebebbbbeeeeeeebebbe:
Contact : b bb bbb b
queryA 907:KW: 908
:**:
6gkm_A_1 984:KW: 985
SecStr :SS:
ExpBur :eb:
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[assembly_id:1]
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