[pdbjlvh2]Protein Model on 5zal_A_1_C

Protein Model on 5zal_A_1_C_1 (TEMPLATE: 5zal )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [1314 aa]	Endoribonuclease Dicer :DICER_HUMAN
2	b		C 1 (C)	polymer(polyribonucleotide)	RNA (73-mer)	645N(R) 662T 663G 664R(H) (identity: 50.0 %/32.8 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5zal_A_1 identity=32.8%

queryA       244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE---HHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGIS-GATAENVPVEQIVE: 339
                :* ** ** * *    *** *  ** ****   *                    **  *      ** *                   *        *   :
5zal_A_1      45:RKYQVEL-LEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFT: 143
SecStr          : HHHHHH-HHGGGTSB    SSTTS HHHHHHHHHHHHHHS    SSS     EEE SSHHHHHHHHHHHTTT SS EEE   TTT SSSSS SSS HHH:    
ExpBur          :ebbbbeb-bbbbeeebbbbebeeeeebbbbbbbbebbbbbeeebeeeeebbbbebbbeeeeebeebbebbebbebbebbebebeeeeebeeebeeeebbb:    

queryA       340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASV--GVGDAKNTDEALDYICKLCASLDAS: 437
                :     * *     * ** *   ***   *  *****     ***  **      **       *   *****   *  *     *      *   *    :
5zal_A_1     144:KHQVLIMTCYVALNVLKNGYL-SLSDINLLVFDECHLAILDHPYREIM------KLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKS----: 232
SecStr          :H SEEEE HHHHHHHHTTTTT-TT    EEE   GGG  TTSTHHHHH------HTT  TTT SEEE      SSSS  SSTHHHHHHHHHHHH B----:    
ExpBur          :ebbbbbbbbebbeeeeeebbe-eeeebebbbbbbbeebeeebbbbebe------eebeeeebbeebbbbbeeebbeeeeeeebeeeeeebbebbeb----:    

queryA       438:VIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKA: 537
                :                                                                                                    :
5zal_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       538:LFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT-------: 630
                :                                                                                                    :
5zal_A_1     233:---------------------------------------------------------------------------------------------NAETATD: 239
SecStr          :---------------------------------------------------------------------------------------------     ST:    
ExpBur          :---------------------------------------------------------------------------------------------ebbbbbb:    

queryA        -1:----------------------------------------------------------------------------------------------------:  -1
                :                                                                                                    :
5zal_A_1     240:LVVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEALNFINDCNISXXXXXRDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEE: 339
SecStr          :TSSS  S S S  EE SSS B SGGGSTTHHHHHHHHHHHHHHHH   -----   THHHHHHHHHHHHHHHHT TTHHHHHHHHHHHHHHHHHHH   S:    
ExpBur          :beeebeeeeebbeeeeebbbebeebeebeebeeebeeebeebeeeeee-----eeebeebeebbebbeebbebbbbbbbbbbbebbbeebeeeeeeeeee:    
Contact         :                                                                                       b   b        

queryA        -1:----------------------------------------------------------------------------------------------------:  -1
                :                                                                                                    :
5zal_A_1     340:LHRKFLLFTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFT: 439
SecStr          :TTTHHHHHHHHHHHHHHHTIIIII  SS S B  S SSSHHHHTTTTSB ------------------------------------------------  :    
ExpBur          :ebeebbeebbebbeebeeebeeebbebeeeeeebeeeeeebeeebeebbe------------------------------------------------ee:    

queryA       631:------ILFVKTRALVDALKNWIE----GNPKLSFLKPGILTGRG-KTNQNTGMTLPA----QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILY: 715
                :      * **  *     *   *       * *        ** *   **       *    *   *  * *    * *****   ** **  ****   :
5zal_A_1     440:NILCG-IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEEVLRKFRAH-ETNLLIATSIVEEGVDIPKCNLVVRF: 537
SecStr          :     -BB  S TTSHHHHHHHTTTTB S    S    SSSS    SSS S TTS    SHHHHHHHHHHHSS-HHHHS B     SS      TTEEEE:    
ExpBur          :eebbb-bbbbeebbbbbbeeebbeebbbeebbbbbebbeeeeebebbeebeeeeebebbeeebeebbeebeee-ebbbbbbbbbbeeeeebeebbbbbbb:    
Contact         :                    b   b                bbb                                                        

queryA       716:EYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIE-KEQINMYK--EKMMND: 763
                :          *  ** **  *    *          *    **  **    :
5zal_A_1     538:DLPTEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRN: 588
SecStr          :T    HHHHHHHHSSS SS   EEEESSTTTSGGGTTHHHHHHHHHHHHHH:    
ExpBur          :bbeeebebbbbbbbbbbeeebebbbbbebeeeebbeeebeeeeebbebeee:

Protein Model on 5zal_A_1_C_1 (TEMPLATE: 5zal )

Input Residue Numbers for Focused Sites