Protein Model on 5jch_A_1_C_1
(TEMPLATE: 
5jch
)Protein Model on 5jch_A_1_C_1
(TEMPLATE: 5jch
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [661 aa] | Melanoma differentiation associated protein-5 :D9N195_CHICK | |
| 2 | b | C 1 (Y) | polymer(polyribonucleotide) | RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') | 298N 299Q(K) 300I(V) 301P 325S 326G 327A(D) 347T 349Q 353N 510E 511Q 515T(R) 518K(R) 635K 636T 637R 662T(I) 663G 664R(A) 665G 668N(S) 675L(Q) 678Q 697T 698S(T) 699V 799P(R) 906S(K) (identity: 58.6 %/37.1 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5jch_A_1 identity=37.1% |
queryA 244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND: 342
:* ** * * ** * * *** *** *** * * ** ** *** * * ** * * * * * ** * *:
5jch_A_1 9:RDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHLDKKRKASEQGKVIVLVNKVPLVEQHLRKEFNPFLKHWYQVIGLSGDSELKISFPEVVKRYD: 108
SecStr : HHHHHHHHHHHHT EEEE TTS HHHHHHHHHHHHHHHHHHTT EEEEESSSHHHHHHHHHTHHHHHTTTS EEEE SSS SS HHHHHHH S:
ExpBur :eebbebbbebbbeeebbbbbbeeebebbebbbebbeebbeeeeeeeeebbbbbbbeeeebbebbbeebbeebbeeebebbebbeeeeeeeebeebbeebe:
Contact : bbbb bbb
queryA 343:IIILTPQILVNNLKKGTIPS----LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG--------PLPQVIGLTASVGVGDAKNTDEALDYICKL: 430
: ** * *** * * ** * * * * ** * * ** ** ** * * ** ***** *** * * * * :
5jch_A_1 109:VIICTAQILENSLLNXXXXXESVRLSDFSLIIIDQCHHTQKEGVYNNIMRRYLKEKIKNRKQAKEXXXLIPQPQILGLTASPGVGGARSNSKAEEHILKI: 208
SecStr :EEEEEHHHHHHHHH ----- GGG SEEEEESGGG STT HHHHHHHHHHHHHHHHHHHHH --- EEEEEES SS SSHHHHHHHHHHH:
ExpBur :bbbbbbebbbebbee-----eebebeebbbbbbbbbbebeeeeebbbbbbebbeeeeeeeeeeee---eeeebbbbbbbbbbbbeebeeeeebbebbbeb:
Contact : b b b
queryA 431:CASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE: 530
:** *** * *** * * * * * * * * * * *** * **** :
5jch_A_1 209:CANLDACRIMTVKEHASQLKNQVKEPFKKTVIADDKRRDPFRERIIEIMQDIQKYCQLYPKS----------EFGSQPYEQWVIREERRA----AKEEKR: 294
SecStr :HHHTT SEEEE TTHHHHHHHS EEEEEEE S HHHHHHHHHHHHHHHHHT SS---------- TTSHHHHHHHHHHHHHH----HHTT H:
ExpBur :bbbbbbeebbebeeeeeebeeebeebeeeeeebeeeeeeebeeebbebbeebbebbebeeee----------ebbeeebeebbeeebeeb----beeeee:
Contact : bb b b
queryA 531:ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVR--------------AAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF: 616
: * * ** ****** * ** ** * * ** * * * * * * * ** * :
5jch_A_1 295:KERVC------AEHLKKYNDALQINDTIRMVDAYNHLNNFYKELKRRKTAESDDXXXXXXSKQDETDEFLMRLFHAKKKQLKELARKPEYDNEKLMKLRN: 388
SecStr :HHHHH------HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHS S ------ HHHHHHHHHHHHHHHHHHHHHT GGGS HHHHHHHH:
ExpBur :ebbbb------bebbbbbbbbbebbeebbbebbbebbbebbeebebbbeeeeee------ebeeebbeebbebbeebeeebeeebeeeeebbebbeebee:
queryA 617:ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS--FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL: 714
: * ** * * * *** ** ** *** * * * * ** * * * * * **** ** ** ** ** ** :
5jch_A_1 389:TLMEEFTKTEEPRGIIFTKTRQSALALYHWIMDNPKFEEVGIKAHFLIGAGHNSETKPMTQNEQREVIDKFRG-GSINLLIATTVAEEGLDIKECNIVIR: 487
SecStr :HHHHHHSSSSS EEEE SSHHHHHHHHHHHHTSHHHHHHT EEEE S SSS HHHHHHHHHHHHH-TS EEEE GGGTSSS BSEEEE:
ExpBur :bbeebbeeeeebbbbbbbeebebbebbbebbeeeeebeeeebebeebbbeeeeeeeeebeeeebeebbeebee-eebbbbbbbebbbbebebeebbbbbb:
Contact : bbb bbbb b b b bbb
queryA 715:YEYVGNVIKMIQTRGRGRARGSKCFLL-TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKK------: 807
:* * * * * * *** ** * * * * * * * * ** * * * ** * * * * * ** :
5jch_A_1 488:YGLVTNEIAMVQARGRARADESTYALVASSGSGAVEREDVNIFRENMMYKAIRRVQEMPPEEYLNKIQDFQLQS--IVEKQMKAKRDQRXXXKKNPSLIT: 585
SecStr :ES HHHHHHHHHHB STT EEEEEEETTTTHHHHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHH--HHHHHHHHHHHT --- GGGEE:
ExpBur :bebbeebbbbbbbbbbbeeeebbbbbbbbeeeebbeebeebeebbebbeebbeebeebeeeebeeebeebbeeb--beeeeeeeeeeee---eeeeeebe:
Contact : b
queryA 808:LLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPH-PKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVV--EDIATGVQTL: 904
: ** * * * * *** * * * * * * ** * * ** *** ** :
5jch_A_1 586:FLCKNCHKLICSGEDIQVIENMHHVSVKKDFQHLYHKRENXXXXXXXXXXQTNVEIIC--KDCGQVWGNMMVYRGLDLPCLKIRNFVVAFEDXXX-TKEI: 682
SecStr :EEETTT EEEEGGGEEEETTTEEEE TT GGGEEEE ---------- S EEEE--TTT EEEEEEESSS EEEEE GGGEEEEE ---- EE :
ExpBur :bbbbbebbebbebebbebbeeeebbbeeeebeeebbebee----------eeeebbbb--eebbbbbbbbbeeeeeeebbbebebbbbbbee----eeeb:
queryA 905:YSKWKDF: 911
: ** :
5jch_A_1 683:FKKWGEL: 689
SecStr : SSGGGS:
ExpBur :beebeeb:
Contact : b
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[assembly_id:1]
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