Protein Model on 5jcf_A_1_C_1
(TEMPLATE: 
5jcf
)Protein Model on 5jcf_A_1_C_1
(TEMPLATE: 5jcf
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [660 aa] | Melanoma differentiation associated protein-5 :D9N195_CHICK | |
| 2 | b | C 1 (Y) | polymer(polyribonucleotide) | RNA (5'-R(P*AP*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') | 298N 299Q(K) 300I(V) 301P 325S 326G 327A(D) 347T 349Q 350I 353N 510E 511Q 514V(I) 635K 636T 637R 662T(I) 663G 664R(A) 665G 668N(S) 669Q(E) 675L(Q) 678Q 697T 698S(T) 699V 906S(K) (identity: 62.1 %/36.5 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5jcf_A_1 identity=36.5% |
queryA 244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND: 342
:* ** * * ** * * *** *** *** * * ** ** *** * * ** * * * * * ** * *:
5jcf_A_1 9:RDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHLDKKRKASEQGKVIVLVNKVPLVEQHLRKEFNPFLKHWYQVIGLSGDSELKISFPEVVKRYD: 108
SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHHHHHTT EEEEESSSHHHHHHHHHTHHHHHTTTS EEEE SSS SS HHHHHHH S:
ExpBur :eebbebbbebbbeeebbbbbbeeebebbebbbebbeebbeeeeeeeeebbbbbbbeeeebbebbbeebbeebbeeebebbebbeeeeeeeebeebbeebe:
Contact : bbbb bbb
queryA 343:IIILTPQILVNNLKKGT----IPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG--------PLPQVIGLTASVGVGDAKNTDEALDYICKL: 430
: ** * *** * * * ** * * * * ** * * ** ** ** * * ** ***** *** * * * * :
5jcf_A_1 109:VIICTAQILENSLLNATEXXESVRLSDFSLIIIDQCHHTQKEGVYNNIMRRYLKEKIKNRKQAKEXXXLIPQPQILGLTASPGVGGARSNSKAEEHILKI: 208
SecStr :EEEEEHHHHHHHHH S -- GGG SEEEEETGGG STTSHHHHHHHHHHHHHHHHHHHHH --- EEEEEES TT SSHHHHHHHHHHH:
ExpBur :bbbbbbebbbebbeeeee--ebbebeebbbbbbbbbbebeeeeebbbbbbebbebeeebeeeeee---eeeebbbbbbbbbbbbeebeeeeebbebbbeb:
Contact : b bb b
queryA 431:CASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE: 530
:** *** * *** * * * * * * * * * * *** * **** :
5jcf_A_1 209:CANLDACRIMTVKEHASQLKNQVKEPFKKTVIADDKRRDPFRERIIEIMQDIQKYCQLYPKS----------EFGSQPYEQWVIREERRA----AKEEKR: 294
SecStr :HHHTT SEEE TTHHHHHHHS EEEEEEE S HHHHHHHHHHHHHHHHHT SS---------- TTSHHHHHHHHHHHHHH----HHTT H:
ExpBur :bbbbbbeebbebeeeeeebeeebeebeeeebebeeeeebebeeebbebbeebbebbebeeee----------ebbeeebeebbeebbeeb----beeeeb:
Contact : bb b
queryA 531:ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVR--------------AAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF: 616
: * * ** ****** * ** ** * * ** * * * * * * * ** * :
5jcf_A_1 295:KERVC------AEHLKKYNDALQINDTIRMVDAYNHLNNFYKELKRRKTAESDDDXXXXXSKQDETDEFLMRLFHAKKKQLKELARKPEYDNEKLMKLRN: 388
SecStr :HHHHH------HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHS SS ----- HHHHHHHHHHHHHHHHHHHHTT GGGS HHHHHHHH:
ExpBur :eebbb------bebbbbbbbbbebbeebbbebbbebbbebbeebeebbeeeeeee-----ebeeebbeebbebbeeebeebeeebeeeeebbebbeebee:
queryA 617:ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS--FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL: 714
: * ** * * * *** ** ** *** * * * * ** * * * * * **** ** ** ** ** ** :
5jcf_A_1 389:TLMEEFTKTEEPRGIIFTKTRQSALALYHWIMDNPKFEEVGIKAHFLIGAGHNSETKPMTQNEQREVIDKFRG-GSINLLIATTVAEEGLDIKECNIVIR: 487
SecStr :HHHHHHTTSSS EEEE S HHHHHHHHHHHHS HHHHHTT EEEE S SSS HHHHHHHHHHHHH-TS EEEE GGGTSSS SEEEE:
ExpBur :bbeebbeeeeebbbbbbbeebebbebbbebbeeeeebeeeebebeebbeeeeeeeeeebeeeebeebbeebee-eebbbbbbbebbbbebebeebbbbbb:
Contact : bbb bbbb bb b b bbb
queryA 715:YEYVGNVIKMIQTRGRGRARGSKCFLL-TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH---EKFIRDSQEKPKPVPDKENK-KLL: 809
:* * * * * * *** ** * * * * * * * * ** * * * ** * ** *:
5jcf_A_1 488:YGLVTNEIAMVQARGRARADESTYALVASSGSGAVEREDVNIFRENMMYKAIRRVQEMPPEEYLNKIQDFQLQSIVEKQMKAKRDQRXXXXXXXXXITFL: 587
SecStr :ES HHHHHHHHHH STT EEEEEEETTTTHHHHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHT --------- EEE:
ExpBur :bebbeebbbbbbbbbbbeeeebbbbbbbbeeeebbeebeebeebbebbeebbeebeebeeeebeeebeebbeebbeeeeeeeeeeee---------ebbb:
queryA 810:CRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPH-PKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVV--EDIATGVQTLYS: 906
:* * * * * *** * * * * * * ** * * ** *** ** :
5jcf_A_1 588:CKNCHKLICSGEDIQVIENMHHVSVKKDFQHLYHKRENXXXXXXXXXXQTNVEIIC--KDCGQVWGNMMVYRGLDLPCLKIRNFVVAFEDXXX-TKEIFK: 684
SecStr :ETTT EEEEGGGEEEETTTEEEE TT GGGEEEE ---------- S EEEE--TTT EEEEEEEETTEEEEEE GGGEEEE ---- EE S:
ExpBur :bbbebbebbeeebbebbeeeebbbeeeebeeebbebee----------eeebbbbb--eebbbbbbebbeeeeeebbbbebebbbbbbee----eeebbe:
Contact : b
queryA 907:KWKDF: 911
:** :
5jcf_A_1 685:KWGEL: 689
SecStr :SGGGS:
ExpBur :ebeeb:
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[assembly_id:1]
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