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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [642 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | |
2 | b | C 1 (C) | polymer(polyribonucleotide) | RNA (5'-R(*CP*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*U)-3') | 298N 299Q 300I 301P 325S 326G 329A 347T 349Q 350I 353N 510E 511Q 514V 635K 636T 637R 662T 663G 664R 678Q 697T 698S 699V 830H 853F 906S (identity: 100.0 %/94.1 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5e3h_A_1 identity=94.1% |
queryA 241:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 340 :****************************************************************************************************: 5e3h_A_1 11:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 110 SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHTTS TT EEEE SSHHHHHHHHHHHHHHHTTTT EEEE HHHHSSS HHHHHHT: ExpBur :eeeeebbebbbebbeeeebbbbbbeeebebebbbbbbbbebbeeeeeeeebbbbbbbeeeebbeebeeebeeebeeeebebbbbbeeebeeeebeeebee: Contact : bbbb bb b queryA 341:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 440 :****************************************************************************************************: 5e3h_A_1 111:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 210 SecStr : SEEEE HHHHHHHHHTTSS GGG SEEEEETGGG STT HHHHHHHHHHHHHHSS EEEEEES TT SSHHHHHHHHHHHHHHTT SEEE: ExpBur :bbbbbbbbebbbebbeeeebebbeebebbbbbbbbbbeeeeebbebbbebbebbeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbbbbbebbbbbbb: Contact : b bb b queryA 441:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 540 :****************************************************** ******************** **************: 5e3h_A_1 211:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLEXXXXXXXXXFGTQKYEQWIVTVQKACMVFXXXDKDEESRICKALFL: 310 SecStr : TTHHHHTTTS EEEEEE HHHHHHHHHHHHHHHHHHTTT --------- SHHHHHHHHHHHHHHS --- SHHHHHHHHHHH: ExpBur :bbeeeeeebeeebeebebeeeebeebeeeebbebbeebbeebeeebeeeeeeee---------eeeeebeeebeeeeeebeee---eeeeeeeebbbbeb: Contact : bb b queryA 541:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 640 :************************************ ************************************************************: 5e3h_A_1 311:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAXXXXEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 410 SecStr :HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHH ---- THHHHHHHHHHHHHHHHHHHH GGG HHHHHHHHHHHHHHHH TT EEEE SSHHHH: ExpBur :bbebbbebbebbebbebbbbebbbeebeebbeebee----eeeeebeebbeebeeebeebeeeeebebebbeebbebbeebbeeeeebbbbbbbeeeebb: Contact : bbb queryA 641:DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 740 :************************* **************** ***************************************************: 5e3h_A_1 411:DALKNWIEGNPKLSFLKPGILTGRGXXXXXTGMTLPAQKCILDAFKXXXDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 510 SecStr :HHHHHHHHT GGGTT EEEE ----- HHHHHHHHHTT --- SEEEE GGGTT SEEEEES HHHHHHHGGG STT EEEE: ExpBur :ebbbebbeebeebeebebbbbbeee-----eebeeeebbebbeebe---eebbbbbbebbbbbeebeebebbbbbbbeeebbebbbbbbbbbeeebebbb: Contact : bbb b bbb queryA 741:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 840 :******************************************************* *****************************************: 5e3h_A_1 511:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEXXXXVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE: 610 SecStr :EESSSHHHHHHHHHHHHHHHHHHHHHHHHHS TTTHHHHHHHHHHHHHHHHHS ---- S EEE TTT EEEETTTEEEETTTEEEE STTGGG: ExpBur :bbeeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeebeeee----eeeeeeeebebbbbbeebbebeebbbbeeeebbbeeeebee: Contact : b queryA 841:CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922 :************************** ************************ ********************: 5e3h_A_1 611:CFVSRPHPKPKQFSSFEKRAKIFCARXXCSHDWGIHVKYKTFEIPVIKIESFXXXXXXXXXXTLYSKWKDFHFEKIPFDPAE: 692 SecStr :SEEEEE S TT EEEEEEE -- EEEEEEEETTEEEEEE GGG ---------- SSSTT S B S : ExpBur :ebeeeeeeeeeeeeebebebbbebee--eeeebbeebebeeeebbbbebebb----------eeeebbeebebeeeebeeee: Contact : b b |