Protein Model on 8dvu_A_1_B_1 (TEMPLATE: 8dvu )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(RIGI_HUMAN) A 1 (A) polymer(polypeptide(L)) [669 aa] Antiviral innate immune response receptor RIG-I :DDX58_HUMAN
2 b B 1 (B) polymer(polyribonucleotide) OHSLR30 298N 299Q 300I 301P 325S 326G 330E 347T 349Q 350I 353N 379K 380Q 381H 418K 499I 507Q 508K 510E 511Q 514V 546R 635K 636T 637R 662T 663G 664R 666K 667T 668N 674T 676P 678Q 697T 698S 699V 719G 720N 750K 827E 828E 829C 830H 859R 875I 877V 878K 879Y 880K 888K 906S 907K 908W 909K (identity: 100.0 %/98.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8dvu_A_1 identity=98.1%
queryA       240:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 339
                :****************************************************************************************************:
8dvu_A_1     240:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 339
SecStr          :     HHHHHHSTTGGGT  EE    TTS HHHHHHHHHHHHHHSS TT    EEEE SSHHHHHHHHHHHHHHHTTTT  EEEE SSS S S HHHHHT:    
ExpBur          :eeeeeebbebbbebbeeeebbbbbbeeebebebbbbbbbeebbeeeeeeeebbbbbbbeeeebbeebeeebbebbeeeebebebbbeeeeeeeebeebbe:    
Contact         :                                                          bbbb                       bb   b         

queryA       340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 439
                :****************************************************************************************************:
8dvu_A_1     340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 439
SecStr          :T SEEEE HHHHHHHHHTTSS  GGG SEEEEETGGG SSS HHHHHHHHHHHHHTTS  S   EEEEE S    TT  SHHHHHHHHHHHHHHTT  B :    
ExpBur          :ebbbbbbbbebbbebbeeeebeebeebebbbbbbbbbbeeeeebbebbbebbebebeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbbbbbbbb:    
Contact         :       b bb  b                         bbb                                    b                     

queryA       440:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 539
                :****************************************************************************************************:
8dvu_A_1     440:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 539
SecStr          :   SSSHHHHTTT    EEEEEE    S  HHHHHHHHHHHHHHHHHHHHHS GGGS    S  TTSHHHHHHHHHHHHHHHS   S HHHHHHHHHHHH:    
ExpBur          :bbbeeeeeebeeebeebebeeeebeebeeeebeebbbebbeebbebbeeeeeebeeebeeeebebbeeebeebbeebbeebbeeeeeeeeebbebbbbbb:    
Contact         :                                                           b       bb bb  b                         

queryA       540:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 639
                :****************************************************************************************************:
8dvu_A_1     540:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 639
SecStr          :HHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHH   HHHHHHHHHHHHHHHHHHHHHS SSS  HHHHHHHHHHHHHHHH TT  B  B SSHHH:    
ExpBur          :bbbbbbebbbbbbeebeebbbebbbebbeebbeebeeebeeebbeebbeebeeebeebbebbeeeebebbbbebbbebbeebbeeeeebbbbbbbeebeb:    
Contact         :      b                                                                                        bbb  

queryA       640:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 739
                :****************************************************************************************************:
8dvu_A_1     640:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 739
SecStr          :HHHHHHHHHT SS TT  EEEE  SS  SS     HHHHHHHHHH SSSSS SEEEE SSSSSS      SB  EES    HHHHHHHHTT  STT EEE:    
ExpBur          :bebbeebbeebeebeebebbbbbbeeeeeeeeebeeeebeeebebbeeeeeebbbbbbeebbebbebeebebbbbbbbbeebbbbbbbbebbbbeebebb:    
Contact         :                      bbb bbb     b b b                  bbb                   bb                   

queryA       740:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 839
                :****************************************************************************************************:
8dvu_A_1     740:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 839
SecStr          :EEESSTTHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHTT          S EEEEESSS  EEEEGGGEEESSSS  EE  STTT:    
ExpBur          :bbbbeebbbeebeebeeebebbeebbeebeeeeeeebeeebeebbeeebeebeeeeeeeeeeeeeebebbbbbbbbebbebeebebbeeeebbbeeeebe:    
Contact         :          b                                                                            bbbb         

queryA       840:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPA: 921
                :******             ***************************************************************:
8dvu_A_1     840:ECFVSRXXXXXXXXXXXXXRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPA: 921
SecStr          :TTEEE -------------  EEEE STT   EEEEE   SS   EEE GGGEEEEESSS      SSTTT  S  EE    :    
ExpBur          :eebeee-------------eeebbbeeebbbbebbebbeeeeeebbbbebebbbbbbeeeeebeebeebeebebeeeebeee:    
Contact         :                   b               b bbbb       b                 bbbb

Input Residue Numbers for Focused Sites

ex) 2,15,123