Protein Model on 7to2_A_1_B_1 (TEMPLATE: 7to2 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(RIGI_HUMAN) A 1 (A) polymer(polypeptide(L)) [670 aa] Antiviral innate immune response receptor RIG-I :DDX58_HUMAN
2 b B 1 (B) polymer(polyribonucleotide) p3SLR30 298N 299Q 300I 301P 325S 326G 330E 347T 349Q 350I 353N 379K 380Q 381H 382P 499I 507Q 508K 510E 511Q 514V 518K 546R 635K 637R 662T 663G 664R 666K 667T 668N 674T 676P 678Q 697T 698S 699V 702E 719G 720N 723K 750K 827E 828E 829C 830H 859R 875I 877V 878K 879Y 880K 888K 890E 907K 908W 909K (identity: 100.0 %/98.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7to2_A_1 identity=98.2%
queryA       240:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 339
                :****************************************************************************************************:
7to2_A_1     240:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 339
SecStr          :     HHHHHHTTTGGGT  BB    TTS HHHHHHHHHHHHHTSS TT    EEEE SSHHHHHHHHHHHHHHHTTTT  EEE  TTS S S THHHHT:    
ExpBur          :eeeeeebbebbbebbeeeebbbbbbeeebebebbbbbbbeebbeebeeeeebbbbbbbebeebbeebeeebeebbeeeebebbbbbeeeeeeeebeebbe:    
Contact         :                                                          bbbb                       bb   b         

queryA       340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 439
                :****************************************************************************************************:
7to2_A_1     340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 439
SecStr          :T SEEEE HHHHHHHHHTTSS  GGG SEEEEETGGG  SS HHHHHHHHHHHHHTTS  S   EEEEE S    TT  SHHHHHHHHHHHHHHTT  B :    
ExpBur          :ebbbbbbbbeebbebbeeeebebbeebebbbbbbbbebeeeeebbebbbebbebebeeeeeeebbbbbbbbbbbbbebeeeeebbeebbebbbbbbbbbb:    
Contact         :       b bb  b                         bbbb                                                         

queryA       440:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 539
                :****************************************************************************************************:
7to2_A_1     440:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 539
SecStr          :    TTHHHHTTT    EEEEEE    S  HHHHHHHHHHHHHHHHHHHHHS GGGT    S  SSSHHHHHHHHHHHHHHS    S HHHHHHHHHHHH:    
ExpBur          :bbbeebeeebeeebeebebeeeebeebeeeebeebbbebbeebbebbeeebeebeeebeeeebebbeeebbebbeebbeebbeeeeeeeeebbebbbbbb:    
Contact         :                                                           b       bb bb  b   b                     

queryA       540:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 639
                :****************************************************************************************************:
7to2_A_1     540:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 639
SecStr          :HHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHTT   HHHHHHHHHHHHTHHHHHHHHS SSS  HHHHHHHHHHHHHHHH TT  B  B S HHH:    
ExpBur          :bbbbbbeebbbbbebbebbbbebbbebbeebbeebeeebeeebbeebbeebeeebeebeebbeeeebebebbebbbebbeebbeeeeebbbbbbbeebeb:    
Contact         :      b                                                                                        b b  

queryA       640:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 739
                :****************************************************************************************************:
7to2_A_1     640:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 739
SecStr          :HHHHHHHHHT SS  S  EEEE  SS  SS     HHHHHHHHTT SSSSS SEEEE SSTTSS      SB  EES   SHHHHHHHHTT  STT EEE:    
ExpBur          :bebbeebbeebeebeebebbbbbeeeeeeeeebbebeebeeebebbeeeeebbbbbbbebbbeebebeebbbbbbbbbeeebbebbbbbbbbbbeebebb:    
Contact         :                      bbb bbb     b b b                  bbb  b                bb  b                

queryA       740:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 839
                :****************************************************************************************************:
7to2_A_1     740:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 839
SecStr          :EEESSTTHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHTTS         S EEEEESSS  EEEEGGGEEESSSS  EE  HHHH:    
ExpBur          :bbbbeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeeeeebeeeeeeeeeebeeebbbbbbbbbbebbebeebbbbeeeebbbeeeebe:    
Contact         :          b                                                                            bbbb         

queryA       840:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPA: 921
                :******            ****************************************************************:
7to2_A_1     840:ECFVSRXXXXXXXXXXXXKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPA: 921
SecStr          :TTEEE ------------   EEEE SSS   EEEEE   SS   EEE GGGEEEEESSS      SSTTTS S  EE    :    
ExpBur          :ebbeee------------eeeebbbeeebbebebbebeeeeeeebbbbebebbbbbbeeeeebeeeeebeebebeeeebeee:    
Contact         :                   b               b bbbb       b b                bbb

Input Residue Numbers for Focused Sites

ex) 2,15,123