[pdbjlvh2]Protein Model on 7eld_A_1_B

Protein Model on 7eld_A_1_B_1 (TEMPLATE: 7eld )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [1137 aa]	Endoribonuclease Dicer homolog 1 :DCL1_ARATH
2	b		B 1 (B)	polymer(polyribonucleotide)	pri-miRNA 166f	298N(P) 299Q(K) 300I(V) 301P 321V(C) 322T(G) 323G(E) 324I(M) 325S(G) 326G(Q) 327A(D) 329A(W) 330E(D) 333P(R) 347T 349Q 350I 353N 378S(V) 380Q(K) 381H 382P 418K(S) 425D(K) 636T(R) 637R(V) 660I(S) 661L(M) 662T(I) 664R(H) 699V 700A 719G(K) 720N(T) (identity: 26.5 %/32.3 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7eld_A_1 identity=32.3%

queryA       244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH-HLKKFPQGQKGKVVFFANQIP-VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
                :* ***   *   * ****    ** ***    *     *     *  *   **     * ** *            *                    *  :
7eld_A_1     250:RRYQLDV-LEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKVPLVYQQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESK: 348
SecStr          : HHHHHH-HHHHHHS EE   SS TTHHHHHHHHHHHHHHS  SSGGGS  EEE   HHHHHHHHHHHHHS  S EEE       HHHHHHHHHHHHHH :    
ExpBur          :bebbeeb-beebeeebbbbbbbeeeebeebbbebbebbbeeeeeeebbbbbbbbbeebbebebbbeebeeebeeebbebebeeebeeebeeebeebeeee:    
Contact         :                                                       bbbb                    bbbbbbb bb  b        

queryA       342:DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS-VGV-GDAKNTDEALDYICKLCASLDASVI: 439
                :     * *** * *    *       * * ****   * ***   *               *   * *** *   *     * *   *  *   ** *  :
7eld_A_1     349:QVLVMTAQILLNILRHSII-RMETIDLLILDECHHAVKKHPYSLVMSEFYHTT---PKDKRPAIFGMTASPVNLKGVSSQVDCAIK-IRNLETKLD-STV: 442
SecStr          :SEEEE HHHHHHHHTT  T-TGGG  S EE  TTT  SSSHHHHHHHHHHS S---SSSS S  EE    SS SS TTT SSS HH-HHHHHHHHT- EE:    
ExpBur          :bbbbbbbebbbebbbeeee-ebbbbbbbbbbbbbebeeeeebbebbbbbeebe---beebbebbbbbbbbbbbbeebeebebbbbe-bbbbbebbe-bee:    
Contact         :     b bb  b                        b bbb                                 b   b      b              

queryA       440:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 539
                : * *    ***  *  *                                                                                   :
7eld_A_1     443:CTIK-DRKELEKHVPMPSEI--------------------------------------------------------------------------------: 461
SecStr          :    -TTTTTTSS     EE--------------------------------------------------------------------------------:    
ExpBur          :bebe-eeebbeeebbebeee--------------------------------------------------------------------------------:    

queryA       540:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI----------: 629
                :                                                                                                    :
7eld_A_1     462:------------------------------------------------------------------------------------------VVEYDKAATM: 471
SecStr          :------------------------------------------------------------------------------------------EEESSSS   :    
ExpBur          :------------------------------------------------------------------------------------------eeebbeeeee:    

queryA        -1:----------------------------------------------------------------------------------------------------:  -1
                :                                                                                                    :
7eld_A_1     472:WSLHETIKQMIAAVEEAAQASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAANLIHKLRAINYTLAELGQWCAYKVGQSFLSALQSDERVNFQVD: 571
SecStr          : HHHHHHHHHHHHHHHHHHHH -------------------------------- HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH   HH:    
ExpBur          :beebeeebeebbeebeebeeee--------------------------------eeeebbebbebbbebbebbbbbbbbbbbebbbebbeebbeeeeeee:    
Contact         :                                                            b  b                                    

queryA       630:------------------------------------------------------------------------------------------------TILF: 633
                :                                                                                                 * *:
7eld_A_1     572:VKFQESYLSEVVSLLQCELLEGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLIKLLLKYQHTADFR-AIVF: 670
SecStr          :HHHHHHHHHHHHHHHHHHHHHH --------------------------------------------------------  HHHHHHHHGGG   -  BB:    
ExpBur          :beebbeebeebbeebbeebeeee--------------------------------------------------------bbeebbeebeeeeeee-bbbb:    

queryA       634:VKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRA: 733
                :*        *       * ***       *    *    *           *   *    * ***** ** ** *** *        *   ** *** * :
7eld_A_1     671:VERVVAALVLPKVFAELPSLSFIRCASMIGH---NNSQEMKSSQMQDTISKFR-DGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARK: 766
SecStr          : SSHHHHHHHHHHHHHTT         SS S---TTSS   HHHHHHHHHHHH-SHHHHHH  B SS  S    S SB  BSS  S HHHHHHHHHH  S:    
ExpBur          :beeebbbbbbbebbeeeeeeebeebbeeeee---eebeebebeebbebbeebe-eeebbebbbbbeebeebebeebbbbbbbebeeebbbbbbbebbbee:    
Contact         :  bb                      bbb b                                  bb                  bb             

queryA       734:RGSKCFLLTSNAGV: 747
                : **   *      *:
7eld_A_1     767:PGSDYILMVERGNV: 780
SecStr          :TT BEEEEE TTTT:    
ExpBur          :eeebbbbbebeeee:

Protein Model on 7eld_A_1_B_1 (TEMPLATE: 7eld )

Input Residue Numbers for Focused Sites