[pdbjlvh2]Protein Model on 6h66_A_1_B

Protein Model on 6h66_A_1_B_1 (TEMPLATE: 6h66 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RIGI_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [667 aa]	Interferon-induced helicase C domain-containing protein 1 :IFIH1_MOUSE
2	b		B 1 (X)	polymer(polyribonucleotide)	RNA (5'-R(PUPCPCPAPUPGPCPGPCPAPUPGPAPCP*G)-3')	379K 380Q(E) 381H(A) 507Q 508K(H) 511Q 674T 676P(T) 720N 750K(R) 830H 907K (identity: 58.3 %/38.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6h66_A_1 identity=38.0%

queryA       244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-QKGKVVFFANQIPVYEQQ-KSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341
                :* ** * * **  *** *** *** *** *   *   ** *  *    ***    *     **     *  *     **  * ** *         *   :
6h66_A_1     310:RPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQASESGKVIVLVNKVMLAEQLFRKEFNPYLKK-WYRIIGLSGDTQLKISFPEVVKSY: 408
SecStr          : HHHHHHHGGGGSS  EE    TTS HHHHHHHHHHHHHHHHHHHT    EEEEESSHHHHHHHHHHTHHHHHTT-TS   EE SSS  SS HHHHHHS :    
ExpBur          :eebbeebbebbeeeeebbbbbeeebebbebbbebbbebbeebeeeeeebbbbbbbeebbbbeebeeebbeeebee-ebebbebbeeeeeeeebbebbebe:    

queryA       342:DIIILTPQILVN---NLKKGTIPS--LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGS--------SGPLPQVIGLTASVGVGDAKNTDEALDYIC: 428
                :* ** * *** *   **  *      ** * * * **** * *   ** **  ** ***             ****  ***** *** **   **   * :
6h66_A_1     409:DVIISTAQILENSLLNLESGDDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLRNNDLKKQNKPAIPLPQILGLTASPGVGAAKKQSEAEKHIL: 508
SecStr          :SEEEEEHHHHHHHHHHHHHT SS   GGG SEEEES GGG STT TTHHHHHHHHHHHHHHHHHHHHT       EEEE  S    SS SSHHHHHHHHH:    
ExpBur          :ebbbbbbeebbebbeeeeeeeeebbebeebbbbbbbbbbebeeebebbbbbbbbbeebeebeeeeeeeeeeeeebbbbbbbbbbbbeebeeeeebbebbb:    
Contact         :                                          bbb                                                       

queryA       429:KLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDK: 528
                :  ** ***  * *** **  *      * * *          **      *                        **** ****     *        * :
6h66_A_1     509:NICANLDAFTIKTVKENLGQLKHQIKEPCKKFVIAXXXXXNPFKEKLLEIMASIQTYCQKSPMS----------DFGTQHYEQWAIQMEKKA----AKDG: 594
SecStr          :HHHHHHT S      TTHHHHHHH    B      ----- HHHHHHHHHHHHHHHHHT   SS---------- SSSHHHHHHHHHHHHHH----HTTT:    
ExpBur          :ebbbbbbbeebebbeeeeebbeeebeeeeeeeeee-----eebeeebeebbeebbeebebebee----------eeeeeebbebbeeebeeb----beee:    
Contact         :                                                                              bb  b                 

queryA       529:DEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGF------------DEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF: 616
                :    * *        ****** ** *    ** **   *  *        *            **    *   *      *      *     **  *  :
6h66_A_1     595:NRKDRVC------AEHLRKYNEALQINDTIRMIDAYSHLETFYTDEKEKKFAVLNDSXXXXKLDETDEFLMNLFFDNKKMLKKLAENPKXXXEKLIKLRN: 688
SecStr          : SSSSHH------HHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHTT ----   HHHHHHHHHHHHHHHHHHHHHT   --- HHHHHHH:    
ExpBur          :eeebbbb------bebbebbbbbbebbeebbbebbbebbbebbeebeebbebeeeee----eeeebbbebbeebeebeeebeeebeeee---ebbeebee:    

queryA       617:ILQEEYHLNPETIT-ILFVKTRALVDALKNWIEGNPKLSF--LKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI: 713
                :   *      *    * * ***    **  **  * *      *   * * *       **   **     *   *  * **** ** ** **  ** **:
6h66_A_1     689:TILEQFTRSEESSRGIIFTKTRQSTYALSQWIMENAKXXXVGVKAHHLIGAGHSSEVKPMTQTEQKEVISKFR-TGEINLLIATTVAEEGLDIKECNIVI: 787
SecStr          :HHHHHHHHHSS    EE  S SHHHHHHHHHHHHS  ---    EEE     S TTS    HHHHHHHHHHHH-HTSS EEE  THHHHH    SB    :    
ExpBur          :bbeebbeeeeeebebbbbbeebebbebbeebbeeeeb---eebeeebbbbeeeeeeeeebeeeebeebbeebe-ebebbbbbbbebbbebbebbebbbbb:    
Contact         :                                                            b b                                     

queryA       714:LYEYVGNVIKMIQTRGRGRARGSKCFLLTSN-AGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH---EKFIRDSQEKPKPVPDKENK-KL: 808
                : *    * * * * *** **  *   * **   ** * *  *   ****   * * *         ***  *     **         *   *      *:
6h66_A_1     788:RYGLXXNEIAMVQARGRARADESTYVLVTSSXXGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKILELQVQSILEKKMKVKRSIAKQYNDNPSLITL: 887
SecStr          : B  -- HHHHHHHHHHB SSS B   B   --  HHHHHHHHHHHHHHHHHHHHHHSS HHHHHHHHHHHHHHHHHHHHHHHHHHHHH     S    E:    
ExpBur          :bbee--ebbbbbbbbebbeeeebbbbbbbee--ebeeebeebeeebebbeebbeebeeeeeeebeeebeebbeebbeeeeeeeeeeeeeeeeeeeeebeb:    
Contact         :      b                              b                                                              

queryA       809:LCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEK-RAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSK: 907
                :**  *  * *      ***  *       **     *                 * *    *   **     *    *  **  ***          * *:
6h66_A_1     888:LCKNCSMLVCSGENIHVIEKMHHVNMTPEFKGLYIVRENKXXXXXXXXXXTNGEIIC---KCGQAWGTMMVHKGLDLPCLKIRNFVVNFKNNSPKKQYKK: 984
SecStr          :E SSS  EEE SSS EEETTTEEE  STTTTTT EEE   ----------   EEE ---SSS EEEEEEEETTEEEEEE GGG EE  SS  S B  SS:    
ExpBur          :bbbbeeeebbbbeebebbeeeebbbbeeebeeebeebeee----------eebebbb---ebbbbbbebbebeebebbbbebeebbbebeeeeebeebee:    
Contact         :                     b                                                                             b

queryA       908:W: 908
                :*:
6h66_A_1     985:W: 985
SecStr          :G:    
ExpBur          :b:

Protein Model on 6h66_A_1_B_1 (TEMPLATE: 6h66 )

Input Residue Numbers for Focused Sites