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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [689 aa] | Interferon-induced helicase C domain-containing protein 1 :IFIH1_MOUSE | |
2 | b | B 1 (X) | polymer(polyribonucleotide) | RNA (5'-R(P*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP*GP*AP*G)-3') | 379K 380Q(E) 381H(A) 507Q 508K(H) 666K(H) 674T 676P(T) 719G(T) 720N 750K(R) 829C(M) 830H 849K(A) 858K(T) 859R(N) 875I(T) 888K 907K 908W (identity: 40.0 %/38.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6gkm_A_1 identity=38.2% |
queryA 244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-QKGKVVFFANQIPVYEQQ-KSVFSKYFERHGYRVTGISGATAENVPVEQIVENN: 341 :* ** * * ** *** *** *** *** * * ** * * *** * ** * * ** * ** * * : 6gkm_A_1 310:RPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQASESGKVIVLVNKVMLAEQLFRKEFNPYLKK-WYRIIGLSGDTQLKISFPEVVKSY: 408 SecStr : HHHHHHHGGGGSS EEEE TTS HHHHHHHHHHHHHHHHHHTT EEEEESSSHHHHHHHHHTTHHHHTT-TS EEEE SSSSTTTTHHHHTTS : ExpBur :eebbeebbeebbeeebbbbbbebebebeebbbebbbbbbeebeeeeeebbbbbbbbeebbbebbeeebbeeebee-ebebbebbeeeeeeeebeebbeee: queryA 342:DIIILTPQILVN---NLKKGTIPS--LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGS--------SGPLPQVIGLTASVGVGDAKNTDEALDYIC: 428 :* ** * *** * ** * ** * * * **** * * ** ** ** *** **** ***** *** ** ** * : 6gkm_A_1 409:DVIISTAQILENSLLNLESGDDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLRNNDLKKQNKPAIPLPQILGLTASPGVGAAKKQSEAEKHIL: 508 SecStr :SEEEEESHHHHHHHHHHHHSSS GGG SEEEES GGG TT TTHHHHHHHHHHHHHHHHHHHH S EEEEEES S SSHHHHHHHHH: ExpBur :bbbbbbbebbbebbeeeeeeeeebbebeebbbbbbbbbbebeeeeebbbbbbebbebeeebeebeeeeeeeeeebbbbbbbbbbbbeebeeeeebbebbb: Contact : bbb queryA 429:KLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDK: 528 : ** *** * *** ** * * * * ** * **** **** * * : 6gkm_A_1 509:NICANLDAFTIKTVKENLGQLKHQIKEPCKKFVIADDTRENPFKEKLLEIMASIQTYCQKSPMS----------DFGTQHYEQWAIQMEKKA----AKDG: 594 SecStr :HHHHHTT S SSHHHHHHH EEEEEEE S HHHHHHHHHHHHHHHHHHT S---------- SSSSHHHHHHHHHHHHH----HHHT: ExpBur :ebbbbbbbeebeebeeeeeebeeebeebeeeeeebeeeebeebeebbeebbeebbeebeeebee----------ebeeeebbebbeebbeeb----beee: Contact : bb queryA 529:DEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGF------------DEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF: 616 : * * ****** ** * ** ** * * * ** * * * * ** ** * : 6gkm_A_1 595:NRKDRVC------AEHLRKYNEALQINDTIRMIDAYSHLETFYTDEKEKKFAVLNDSXXSLKLDETDEFLMNLFFDNKKMLKKLAENPKYENEKLIKLRN: 688 SecStr : TTTHHH------HHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHT -- HHHHHHHHHHHTTHHHHHHHHS GGG HHHHHHHH: ExpBur :eeebbbb------bbbbebbbbbbebbeebbbebbbebbeebbeebeebbebbeeee--eeeeeebbeebbeebeeeeeebeeebeeeebbbbbbeebbe: queryA 617:ILQEEYHLNPETIT-ILFVKTRALVDALKNWIEGNPKLS--FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI: 713 : * * * * *** ** ** * * * * * * ** ** * * * **** ** ** ** ** **: 6gkm_A_1 689:TILEQFTRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVGVKAHHLIGAGHSSEVKPMTQTEQKEVISKFR-TGEINLLIATTVAEEGLDIKECNIVI: 787 SecStr :HHHHHHHHSSS EEEE S SHHHHHHHHHHHH HHHHHTT EEEE S TTS HHHHHHHHHHHH-HTS SEEEE TTSSSSS S : ExpBur :bbeebbeebeeebebbbbbeeeebbebbbebbeeeeebeeeebeeebbbbeeeeeeeeebebeebeebbeebe-ebebbbbbbbebbbbbbebeebbbbb: Contact : b b b queryA 714:LYEYVGNVIKMIQTRGRGRARGSKCFLLTSN-AGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKK-----: 807 : * * * * * * *** ** * * ** ** * * * **** * * * *** * * : 6gkm_A_1 788:RYGLVTNEIAMVQARGRARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKILELQV-QSILEKKMKVKRSIAXXYNDNPSLIT: 886 SecStr : BS HHHHHHHHTT SSS EEEEEEESSS HHHHHHHHHHHHHHHHHHHHHHTS HHHHHHHHHHHHH-HHHHHHHHHHHHHH -- SS EE: ExpBur :bbebbeebbbbbbbbbbbbeeebbbbbbbbeeeebeeebeebeeebeebeebbeebeebeeeebeeebeebbe-ebbeeeeeeeeeeee--eeeeeeebe: Contact : bb b queryA 808:LLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPK-PKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYS: 906 :*** * * * *** * ** * * * * * ** * * ** *** * : 6gkm_A_1 887:LLCKNCSMLVCSGENIHVIEKMHHVNMTPEFKGLYIVRENKALQKXXXDYQTNGEIIC---KCGQAWGTMMVHKGLDLPCLKIRNFVVNFKNNSPKKQYK: 983 SecStr :EEETTTTEEEEETTTEEEETTTEEEE HHHHTS EE STTT --- S EEE ---SSS EEEE BTTB B SSSEEEEETTT S: ExpBur :bbbbbbeeebbebeebbbbeeeebbbebeebeeebeebebeeeee---eeeeebebbb---ebbbbbbebbebeeeebbbbebebbbbeeeeeeebebbe: Contact : bb bb bb b b queryA 907:KW: 908 :**: 6gkm_A_1 984:KW: 985 SecStr :SS: ExpBur :eb: Contact :bb |