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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [660 aa] | Melanoma differentiation associated protein-5 :D9N195_CHICK | |
2 | b | B 1 (X) | polymer(polyribonucleotide) | RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') | 378S(Q) 379K 380Q(E) 381H(G) 507Q 508K(P) 511Q 666K(H) 718V 719G(T) 720N 750K(R) 791R(K) 829C(M) 888K 907K 909K(G) (identity: 41.2 %/36.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5jcf_A_1 identity=36.5% |
queryA 244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND: 342 :* ** * * ** * * *** *** *** * * ** ** *** * * ** * * * * * ** * *: 5jcf_A_1 9:RDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHLDKKRKASEQGKVIVLVNKVPLVEQHLRKEFNPFLKHWYQVIGLSGDSELKISFPEVVKRYD: 108 SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHHHHHTT EEEEESSSHHHHHHHHHTHHHHHTTTS EEEE SSS SS HHHHHHH S: ExpBur :eebbebbbebbbeeebbbbbbeeebebbebbbebbeebbeeeeeeeeebbbbbbbeeeebbebbbeebbeebbeeebebbebbeeeeeeeebeebbeebe: queryA 343:IIILTPQILVNNLKKGT----IPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG--------PLPQVIGLTASVGVGDAKNTDEALDYICKL: 430 : ** * *** * * * ** * * * * ** * * ** ** ** * * ** ***** *** * * * * : 5jcf_A_1 109:VIICTAQILENSLLNATEXXESVRLSDFSLIIIDQCHHTQKEGVYNNIMRRYLKEKIKNRKQAKEXXXLIPQPQILGLTASPGVGGARSNSKAEEHILKI: 208 SecStr :EEEEEHHHHHHHHH S -- GGG SEEEEETGGG STTSHHHHHHHHHHHHHHHHHHHHH --- EEEEEES TT SSHHHHHHHHHHH: ExpBur :bbbbbbebbbebbeeeee--ebbebeebbbbbbbbbbebeeeeebbbbbbebbebeeebeeeeee---eeeebbbbbbbbbbbbeebeeeeebbebbbeb: Contact : bbbb queryA 431:CASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE: 530 :** *** * *** * * * * * * * * * * *** * **** : 5jcf_A_1 209:CANLDACRIMTVKEHASQLKNQVKEPFKKTVIADDKRRDPFRERIIEIMQDIQKYCQLYPKS----------EFGSQPYEQWVIREERRA----AKEEKR: 294 SecStr :HHHTT SEEE TTHHHHHHHS EEEEEEE S HHHHHHHHHHHHHHHHHT SS---------- TTSHHHHHHHHHHHHHH----HHTT H: ExpBur :bbbbbbeebbebeeeeeebeeebeebeeeebebeeeeebebeeebbebbeebbebbebeeee----------ebbeeebeebbeebbeeb----beeeeb: Contact : bb b queryA 531:ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVR--------------AAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF: 616 : * * ** ****** * ** ** * * ** * * * * * * * ** * : 5jcf_A_1 295:KERVC------AEHLKKYNDALQINDTIRMVDAYNHLNNFYKELKRRKTAESDDDXXXXXSKQDETDEFLMRLFHAKKKQLKELARKPEYDNEKLMKLRN: 388 SecStr :HHHHH------HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHS SS ----- HHHHHHHHHHHHHHHHHHHHTT GGGS HHHHHHHH: ExpBur :eebbb------bebbbbbbbbbebbeebbbebbbebbbebbeebeebbeeeeeee-----ebeeebbeebbebbeeebeebeeebeeeeebbebbeebee: queryA 617:ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS--FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL: 714 : * ** * * * *** ** ** *** * * * * ** * * * * * **** ** ** ** ** ** : 5jcf_A_1 389:TLMEEFTKTEEPRGIIFTKTRQSALALYHWIMDNPKFEEVGIKAHFLIGAGHNSETKPMTQNEQREVIDKFRG-GSINLLIATTVAEEGLDIKECNIVIR: 487 SecStr :HHHHHHTTSSS EEEE S HHHHHHHHHHHHS HHHHHTT EEEE S SSS HHHHHHHHHHHHH-TS EEEE GGGTSSS SEEEE: ExpBur :bbeebbeeeeebbbbbbbeebebbebbbebbeeeeebeeeebebeebbeeeeeeeeeebeeeebeebbeebee-eebbbbbbbebbbbebebeebbbbbb: Contact : b queryA 715:YEYVGNVIKMIQTRGRGRARGSKCFLL-TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH---EKFIRDSQEKPKPVPDKENK-KLL: 809 :* * * * * * *** ** * * * * * * * * ** * * * ** * ** *: 5jcf_A_1 488:YGLVTNEIAMVQARGRARADESTYALVASSGSGAVEREDVNIFRENMMYKAIRRVQEMPPEEYLNKIQDFQLQSIVEKQMKAKRDQRXXXXXXXXXITFL: 587 SecStr :ES HHHHHHHHHH STT EEEEEEETTTTHHHHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHT --------- EEE: ExpBur :bebbeebbbbbbbbbbbeeeebbbbbbbbeeeebbeebeebeebbebbeebbeebeebeeeebeeebeebbeebbeeeeeeeeeeee---------ebbb: Contact : bbb b b queryA 810:CRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPH-PKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVV--EDIATGVQTLYS: 906 :* * * * * *** * * * * * * ** * * ** *** ** : 5jcf_A_1 588:CKNCHKLICSGEDIQVIENMHHVSVKKDFQHLYHKRENXXXXXXXXXXQTNVEIIC--KDCGQVWGNMMVYRGLDLPCLKIRNFVVAFEDXXX-TKEIFK: 684 SecStr :ETTT EEEEGGGEEEETTTEEEE TT GGGEEEE ---------- S EEEE--TTT EEEEEEEETTEEEEEE GGGEEEE ---- EE S: ExpBur :bbbebbebbeeebbebbeeeebbbeeeebeeebbebee----------eeebbbbb--eebbbbbbebbeeeeeebbbbebebbbbbbee----eeebbe: Contact : b b queryA 907:KWKDF: 911 :** : 5jcf_A_1 685:KWGEL: 689 SecStr :SGGGS: ExpBur :ebeeb: Contact :b b |