Protein Model on 5jc3_A_1_B_1
(TEMPLATE: 
5jc3
)Protein Model on 5jc3_A_1_B_1
(TEMPLATE: 5jc3
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [668 aa] | Melanoma differentiation associated protein-5 :D9N195_CHICK | |
| 2 | b | B 1 (X) | polymer(polyribonucleotide) | RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') | 376N(H) 378S(Q) 379K 380Q(E) 381H(G) 507Q 508K(P) 511Q 666K(H) 718V 719G(T) 720N 750K(R) 796K 828E(N) 829C(M) 830H 907K 908W 909K(G) (identity: 45.0 %/37.2 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5jc3_A_1 identity=37.2% |
queryA 244:RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND: 342
:* ** * * ** * * *** *** *** * * ** ** *** * * ** * * * * * ** * *:
5jc3_A_1 9:RDYQMEVAKPALNGENIIICLPTGSGKTRVAVYITKDHLDKKRKASEQGKVIVLVNKVPLVEQHLRKEFNPFLKHWYQVIGLSGDSELKISFPEVVKRYD: 108
SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHHHHHTT EEEEESSTHHHHHHHHHTHHHHHTTTS EEEE SSS SS HHHHHHH S:
ExpBur :eebbebbbebbbeeebbbbbbeeebebbebbbebbbebbeeeeeeeeebbbbbbbeeeebbebbbeebbeebbeeebebbebbeeeeeeeebeebbeebe:
queryA 343:IIILTPQILVNNLKKGT----IPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG--------PLPQVIGLTASVGVGDAKNTDEALDYICKL: 430
: ** * *** * * * ** * * * * ** * * ** ** ** * * ** ***** *** * * * * :
5jc3_A_1 109:VIICTAQILENSLLNATEXXESVRLSDFSLIIIDQCHHTQKEGVYNNIMRRYLKEKIKNRKQAKEXXXLIPQPQILGLTASPGVGGARSNSKAEEHILKI: 208
SecStr :EEEEEHHHHHHHHH S -- GGG SEEEEETGGG STT HHHHHHHHHHHHHHHHHHHHH --- EEEEEES TT SSHHHHHHHHHHH:
ExpBur :bbbbbbebbbebbeeeee--eebebeebbbbbbbbbbebeeeeebbbbbbebbeeeeeeeeeeee---eeeebbbbbbbbbbbbeebeeeeebbebbbeb:
Contact : b bbbb
queryA 431:CASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE: 530
:** *** * *** * * * * * * * * * * *** * **** :
5jc3_A_1 209:CANLDACRIMTVKEHASQLKNQVKEPFKKTVIADDKRRDPFRERIIEIMQDIQKYCQLYPKS----------EFGSQPYEQWVIREERRA----AKEEKR: 294
SecStr :HHHTT SEEEE TTHHHHHHHS EEEEEEE S HHHHHHHHHHHHHHHHHT SS---------- TTSHHHHHHHHHHHHHH----HHTT H:
ExpBur :bbbbbbeebbebeeeeeebeeebeebeeeeeebeeeeebebeeebbebbeebbebbebeeee----------ebbeeebeebbeebbeeb----beeeeb:
Contact : bb b
queryA 531:ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVR--------------AAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF: 616
: * * ** ****** * ** ** * * ** * * * * * * * ** * :
5jc3_A_1 295:KERVC------AEHLKKYNDALQINDTIRMVDAYNHLNNFYKELKRRKTAESDDDXXXXXSKQDETDEFLMRLFHAKKKQLKELARKPEYDNEKLMKLRN: 388
SecStr :HHHHH------HHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHS SS ----- HHHHHHHHHHHHHHHHHHHHTT GGGS HHHHHHHH:
ExpBur :eebbb------bebbbbbbbbbebbeebbbebbbebbbebbeebebbbeeeeeee-----ebeeebbeebeebbeebbeebeebbeeeeebbebbeebee:
queryA 617:ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS--FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL: 714
: * ** * * * *** ** ** *** * * * * ** * * * * * **** ** ** ** ** ** :
5jc3_A_1 389:TLMEEFTKTEEPRGIIFTKTRQSALALYHWIMDNPKFEEVGIKAHFLIGAGHNSETKPMTQNEQREVIDKFRG-GSINLLIATTVAEEGLDIKECNIVIR: 487
SecStr :HHHHHHTTSSS EEEE S HHHHHHHHHHHHS HHHHHTT EEEE S SSS HHHHHHHHHHHHH-TS EEEE GGGTSSS SEEEE:
ExpBur :bbeebbeeeeebbbbbbbeebebbebbbebbeeeeebeeeebebeebbbeeeeeeeeebeeeebeebbeebee-eebbbbbbbebbbbebebeebbbbbb:
Contact : b
queryA 715:YEYVGNVIKMIQTRGRGRARGSKCFLL-TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKK------: 807
:* * * * * * *** ** * * * * * * * * ** * * * ** * * * * * * * :
5jc3_A_1 488:YGLVTNEIAMVQARGRARADESTYALVASSGSGAVEREDVNIFRENMMYKAIRRVQEMPPEEYLNKIQDFQLQS--IVEKQMKAKRDQRKTXXKNPSLIT: 585
SecStr :ES HHHHHHHHHH STT EEEEEEEGGGTHHHHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHH--HHHHHHHHHHHHHT --- TTSEE:
ExpBur :bebbeebbbbbbbbbbbeeeebbbbbbbbeeeebbeebeebeebbebbeebbeebeebeeeebeeebeebbeeb--beeeeeeeeeeeeee---eeeebb:
Contact : bbb b b
queryA 808:LLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPH-PKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVV--EDIATGVQTL: 904
: ** * * * * *** * * * * * * ** * * ** *** ** :
5jc3_A_1 586:FLCKNCHKLICSGEDIQVIENMHHVSVKKDFQHLYHKRENXXXXXXXXXYQTNVEIIC--KDCGQVWGNMMVYRGLDLPCLKIRNFVVAFEDXXX-TKEI: 682
SecStr :EEETTT EEEEGGGEEEETTTEEEE TT GGGEEEE --------- S EEEE--TTT EEEEEEEETTEEEEEE GGGEEEEE ---- EE :
ExpBur :bbbbbebbebbebebbebbeeeebbbeeeebeebbbebee---------eeeeebbbb--eebbbbbbbbbeeeeeeebbbebebbbbbbee----eeeb:
Contact : bbb
queryA 905:YSKWKDF: 911
: ** :
5jc3_A_1 683:FKKWGEL: 689
SecStr : SSGGGS:
ExpBur :beebeeb:
Contact : bbb
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[assembly_id:1]
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