Protein Model on 5f9f_A_1_B_1
(TEMPLATE: 
5f9f
)Protein Model on 5f9f_A_1_B_1
(TEMPLATE: 5f9f
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[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [673 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | |
| 2 | b | B 1 (B) | polymer(polyribonucleotide) | RNA (5'-R(*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | 298N 299Q 300I 325S 326G 330E 347T 349Q 350I 353N 379K 380Q 381H 382P 507Q 510E 511Q 514V 518K 546R 635K 636T 637R 662T 663G 664R 667T 668N 697T 698S 700A 718V 720N 750K 829C 830H 853F 858K 874G 875I 886V 888K 906S 907K 908W (identity: 100.0 %/98.5 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5f9f_A_1 identity=98.5% |
queryA 240:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 339
:****************************************************************************************************:
5f9f_A_1 10:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 109
SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHHHTS TT EEEE SSHHHHHHHHHHHHHHHTTTT EEEE GGG TTS HHHHHH:
ExpBur :eeeeeebbebbbebbeeeebbbbbbebebeeebbbbbbbbebbeeeeeeeebbbbbbbebeebbeebeeebeebbeeeebebebbbeeebeeeebeeebe:
Contact : bbb bb b
queryA 340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 439
:****************************************************************************************************:
5f9f_A_1 110:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 209
SecStr :T SEEEE HHHHHHHHHHTSS GGG SEEEEETGGG STT HHHHHHHHHHHHHHSS S EEEEEES TT SHHHHHHHHHHHHHHTT SEE:
ExpBur :ebbbbbbbbebbbebbeeeebeebeebebbbbbbbbebeeebbbbebbbebbebeeeeeeeeebbbbbbbbbbbbeebeeeeebbeebbebbbebbbbbb:
Contact : b bb b bbbb
queryA 440:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 539
:****************************************************** **************************************:
5f9f_A_1 210:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLXXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 309
SecStr :E TTHHHHHHHS EEEEEE S HHHHHHHHHHHHHHHHHHTTS -------- SSSHHHHHHHHHHHHHHHT SSSHHHHHHHHHHH:
ExpBur :bbbeeeeeebeeebeebebeeeebeebeebebeebbbebbeebbebbeeebeee--------eebeeeebeeebeebeeebbeeeeeeeeebbebbbbbb:
Contact : b bb b b
queryA 540:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 639
:****************************************************************************************************:
5f9f_A_1 310:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 409
SecStr :HHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHHH GGG HHHHHHHHHHHHHHHH TT EEEE S HHH:
ExpBur :bbbebbeebbbbbebbeebebebbbeebeebbeebeeeeeeebbeebbeebeeeeeebeebbeeeebebebbeebbebbeebbeeeeebbbbbbbeeeeb:
Contact : b bbb
queryA 640:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 739
:****************************************************************************************************:
5f9f_A_1 410:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 509
SecStr :HHHHHHHHHT GGGTT EEEE TTSS S HHHHHHHHHT SSSSS SEEEE SSS S SEEEEES HHHHHHGGGGG STT EEE:
ExpBur :bebbeebbeebeebeebebbbbbeeeeeeeeeebeeeebbebeebbeeeeeebbbbbbeeebbbeebeebebbbbbbbeeebbebbbbbbbbbeeebebb:
Contact : bbb bb bb b b b
queryA 740:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 839
:******************************************************* *******************************************:
5f9f_A_1 510:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQXXPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 609
SecStr :EEES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHTT -- S EEEEETTT EEEEGGGEEEETTTEEEE SSSGG:
ExpBur :bbbeeeebbeebeebeebbebbeebbeebeeeeeeebeeebeebbeeebeeeeee--eeeeeeeeebbbbbbbbbbebbebeebbbbeeeebbbeeeebe:
Contact : b bb
queryA 840:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
:***********************************************************************************:
5f9f_A_1 610:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692
SecStr :GSEEEEE SS TT EEEEEEE GGG EEEEEEEETTEEEEEE GGGEEEEETTT EE SSGGG S B TT :
ExpBur :eebeeeebeeeeeeeebebebbbbbeeeebebebbbebbbeeeebbbbebebbbbbbeeeeebeeeeebeebebeeeebeeee:
Contact : b b bb b b bbb
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[assembly_id:1]
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