Protein Model on 5f98_A_1_B_1
(TEMPLATE: 
5f98
)Protein Model on 5f98_A_1_B_1
(TEMPLATE: 5f98
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [650 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | |
| 2 | b | B 1 (B) | polymer(polyribonucleotide) | RNA (5'-R(P*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | 298N 299Q 300I 325S 326G 347T 349Q 350I 353N 379K 380Q 381H 382P 507Q 510E 511Q 514V 546R 635K 636T 637R 662T 663G 664R 697T 698S 700A 720N 829C 830H 853F 854S 858K 861K 875I 886V 888K 907K 908W 909K (identity: 100.0 %/95.2 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5f98_A_1 identity=95.2% |
queryA 240:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 339
:****************************************************************************************************:
5f98_A_1 10:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 109
SecStr : HHHHHHHTTGGGT EEEE TTS HHHHHHHHHHHHHHTS SS EEEE SSHHHHHHHHHHHHHHHTTTT EEEE GGG TTS HHHHHH:
ExpBur :eeeeeebbebbbeebeeeebbbbbbebebeeeebbbbbbbebbeeeeeeeebbbbbbbeeeebbeebeeebeebbeeeeeebebbbeeebeeeebeeebe:
Contact : bbb bb
queryA 340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 439
:****************************************************************************************************:
5f98_A_1 110:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 209
SecStr :T SEEEE HHHHHHHHHHTSS GGG SEEEEETGGG STT HHHHHHHHHHHHHSSS EEEEEES S SHHHHHHHHHHHHHHTT EE:
ExpBur :ebbbbbbbbebbbebbeeeebeebeebebbbbbbbbbbeeeebbbebbbebbebebeeeeeeebbbbbbbbbbbbeebeeeeebbeebbbbbbebbbbbb:
Contact : b bb b bbbb
queryA 440:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 539
:****************************************************** **************************************:
5f98_A_1 210:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLXXXXXXXXREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 309
SecStr :E SSSHHHHTTTS EEEEEE SS SHHHHHHHHHHHHHHHHHTTS -------- TTSHHHHHHHHHHHHHTTS TTSSSHHHHHHHHH:
ExpBur :bbbeeeeebbeeebeebebeeeeeebbeeebbbebbeebbbebeebeeeeeeee--------eeeeeeebbeebeeeebebbeeeeeeeebbbeebbbbe:
Contact : b bb b
queryA 540:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 639
:****************************************************************************************************:
5f98_A_1 310:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 409
SecStr :HHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHT TTTHHHHHHHHHSHHHHHHHTT TTS HHHHHHHHHHHHHHTT TT EEEE SSHHH:
ExpBur :ebbebbeebbbbbebbebbbbebbbeebbebbeeebeeeebebbeebbeebeebeeebeebbeeeeeebebbebbbebbeebbeeeeebebbbbbeeeeb:
Contact : b bbb
queryA 640:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 739
:************************* **************************************************:
5f98_A_1 410:VDALKNWIEGNPKLSFLKPGILTGRXXXXXXXXXXXXXXXXXXXXXXXXXDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 509
SecStr :HHHHHHHHHT GGGTT EEE ------------------------- SEEEES SSS S SEEEEES HHHHHHHTTTT STT EEE:
ExpBur :bebbbebbeebeebeebebbeeeee-------------------------eebbebbbeeebbeeeeeebebbbbbbbeeebbbbbbbbbbbbeeebebb:
Contact : bbb bb b b
queryA 740:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 839
:****************************************************************************************************:
5f98_A_1 510:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 609
SecStr :EEES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHTTSSSS B EEEEETTT EEEETTTEEEETTTEEEE HHHHG:
ExpBur :bbbbeeebbebbeebeeebebbeebbeebeeeeeeebeeebeebbeeeeeeeeeeeeeeeeeeeeebebbbbbbbbebbebeebbbbeeeebbbeeeebe:
Contact : bb
queryA 840:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
:***********************************************************************************:
5f98_A_1 610:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 692
SecStr :GGEEEEE SS TT EEEEEEE STT EEEEEEEETTEEEEEE GGGEEEEETTT EEE SSGGG B B S :
ExpBur :eebeeeebeeeeeeeebebebebebeeeeeebebbbebbeeeeebbbbebebbbbbbeeeeebeeeeebeebebeeeeeeeee:
Contact : bb b b b b b bbb
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[assembly_id:1]
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