Protein Model on 4on9_A_1_B_1
(TEMPLATE: 
4on9
)Protein Model on 4on9_A_1_B_1
(TEMPLATE: 4on9
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [514 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [495 aa] | Probable ATP-dependent RNA helicase DDX58 :DDX58_HUMAN | 266T 271T 298N 299Q 300I 301P 302V 304E 305Q 372D 373E 453V 454Y 455K 458K 485L 488R 489I 491K 498Q 500Q 501N 503E 530E 533R 537A 541Y 581E 582I 702E 714L 717Y 721V 722I 723K 724M 740L 741L 747V 750K (identity: 100.0 %/93.1 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4on9_A_1 identity=93.1% |
queryA 241:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 340
:****************************************************************************************************:
4on9_A_1 28:FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN: 127
SecStr : HHHHHHHHHHHTT EEEE TTSSHHHHHHHHHHHHHHTS TT EEEE SSHHHHHHHHHHHHHHHHTTT EEEE SS SSS HHHHHHH:
ExpBur :eeeeebbeebbeebbeeebbbbbbeeebebebbbbbbbbebbeeeeeeeebbbbbbbeeeebbeebeeebbeebeeeebebebbbeeeeeeeebeebbee:
Contact : b b bbbbb bb
queryA 341:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 440
:****************************************************************************************************:
4on9_A_1 128:NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA: 227
SecStr : SEEEE HHHHHHHHHHTSS STT SEEEETTGGG STT HHHHHHHHHHHHHHSSS EEEEEES TT SSHHHHHHHHHHHHHHTT SEEE:
ExpBur :bbbbbbbbebbbebbeeeebebbeebebbbbbebeebbeeeebbebbbebbebebeeeeeeebbbbbbbeebebeebeeeeebbeebbebbbbbbbbbbb:
Contact : bb
queryA 441:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL: 540
:****************************************************** ************************** *************:
4on9_A_1 228:TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLEXXSQIQNREFGTQKYEQWIVTVQKACMVXXXXXKDEESRICKALFL: 327
SecStr : TTHHHHHHHS EEEEEE S HHHHHHHHHHHHHHHHHHHHSTT -- S TT HHHHHHHHHHHHHHH ----- HHHHHHHHHHHH:
ExpBur :ebeeeeebbeeebeebeeeeeebeebeebebeebbbebbeebbeebeeebeebe--eeeeebebeeeebbebbebbbeebee-----eeeeeeeeebbeb:
Contact : bbb b b bb b b bb b b b b
queryA 541:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 640
:****************************************************************************************************:
4on9_A_1 328:YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV: 427
SecStr :HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHH GGG HHHHHHHHHHHHHHHH TT EEEE S HHHH:
ExpBur :bbebbeebbbbbbbbebbbbebbbeebeebbeebeeeeeeeebeebbeebeeeeeebeebeeeeebebebbeebbebbeebbeeeeebebbbbbebebbb:
Contact :b bb
queryA 641:DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL: 740
:********************* ****************************************** ******:
4on9_A_1 428:DALKNWIEGNPKLSFLKPGILXXXXXXXXXXXXXXXXXXXXXXXFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQXXXXXXXXGSKCFL: 527
SecStr :HHHHHHHHH GGGTT EEE ----------------------- S SS SEEEE SSS EEEESSEEEEES SS EEEE -------- EEEE:
ExpBur :ebbeebbeebeebeebebbee-----------------------eeeeeeebbbbbeeeeeeeeeebebebbbbbbbeebeeebee--------ebbbbe:
Contact : b b b bbbb b
queryA 741:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRD: 792
:****************************************************:
4on9_A_1 528:LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRD: 579
SecStr :EES HHHHHHHHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHH :
ExpBur :bbeeeeebeeeeeeeeeeebbeebbeebeeeeeeebeeebeebbeeeeeeee:
Contact :b b b
|
[assembly_id:3]
[help]