Protein Model on 4ay2_A_1_B_1
(TEMPLATE: 
4ay2
)Protein Model on 4ay2_A_1_B_1
(TEMPLATE: 4ay2
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RIGI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [628 aa] | PROBABLE ATP-DEPENDENT RNA HELICASE DDX58 :DDX58_HUMAN | |
| 2 | b | B 1 (C) | polymer(polyribonucleotide) | 5'-R-PPP(GP*GP*CP*GP*CP*GP*GP*CP*UP*UP*CP*GP*GP*CP *CP*GP*CP*GP*CP*C)-3' | 298N 299Q 300I 325S 326G 347T 349Q 353N 379K 380Q 381H 382P 498Q 499I 501N 511Q 750K 829C 830H 847H 853F 854S 858K 861K 872D 874G 875I 886V 888K 906S 908W (identity: 100.0 %/91.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4ay2_A_1 identity=91.7% |
queryA 240:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 339
:****************************************************************** *********************************:
4ay2_A_1 2:PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVE: 101
SecStr : HHHHHHTHHHHTT EEEE TTS HHHHHHHHHHHHHHSS TT EEEE SSHHHHHHHHHHHHHHTTTTT EEEE TTS SSS HHHHHH:
ExpBur :eeeeeebbebbbeebeeeebbbbbbeeebebebbbbbbbbebbeebeeeeebbbbbbbeeeeebeebeeebeeebeeeeeebebbbeeeeeeeebeeebe:
Contact : bbb bb
queryA 340:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 439
:****************************************************************************************************:
4ay2_A_1 102:NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI: 201
SecStr :T SEEEE HHHHHHHHHTTSS GGG SEEEEETGGG STT HHHHHHHHHHHHHHTT S EEEEEES S SHHHHHHHHHHHHHHHT EE:
ExpBur :ebbbbbbbbebbbebbeeeebeebeebebbbbbebeebeeeeebbbbbbebbebeeeeeeeeebbbbbbbeebebeebeeeeebbeebbebbbbbbbbbb:
Contact : b b b bbbb
queryA 440:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF: 539
:*********************************************************************************** **********:
4ay2_A_1 202:ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVXXXXXXXEESRICKALF: 301
SecStr :E SSHHHHHHT EEEEEE S SHHHHHHHHHHHHHHHHHHH GGGGGS S S TTSHHHHHHHHHHHHHS ------- HHHHHHHHH:
ExpBur :bbbeebeeebeeeeeeeeeeeeebeebeeeebeebbbebbeebbebbeeebeebeeebeeeebebbeeebbebbeebbeebee-------eeeeebebbe:
Contact : bb b b
queryA 540:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 639
:****************************************************************************************************:
4ay2_A_1 302:LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL: 401
SecStr :HHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHHT GGG HHHHHHHHHHHHHHHH TT EEEE SSHHH:
ExpBur :bbbebbeebbbbbbbbebbbbebbbeebeebbeebeeeeeeeebeebbeebeeeeeebbebbeeeebebebbeebbebbeebbeeeeebebbbbbebebb:
queryA 640:VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF: 739
:********************** ************** ************ ****:
4ay2_A_1 402:VDALKNWIEGNPKLSFLKPGILXXXXXXXXXXXXXXXXXXXXXXXXXXXGDHNILIATSVADEXXXXAQCNLVILYEYVXXXXXXXXXXXXXXXXXSKCF: 501
SecStr :HHHHHHHHHT GGGTT EEE --------------------------- TT EEEESS ---- SEEEEES ----------------- EEE:
ExpBur :bebbeebbeebeebeebbbbee---------------------------eeeeebbbbbeeee----eebebbbebbee-----------------ebbb:
queryA 740:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK: 839
:**************************************************************************************** ***********:
4ay2_A_1 502:LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEDCHYTVLGDAFK: 601
SecStr :EEES HHHHHHHHHHHHHHHHHHHHHHHHTTS HHHHHHHHHHHHHHHHHHHHHT B S EEEEETTT EEEEGGGEEEETTTEEEE SGGGT:
ExpBur :bbbeeeeebeeeeeeeeeeebbeebbeebeeeebeebeeebeeebeeebeeeeeeeeeeeeeeeeebbbbbeeeebebbebeebbbbeeeebbbeeeebe:
Contact : b bb
queryA 840:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 922
:***********************************************************************************:
4ay2_A_1 602:ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE: 684
SecStr :TSEEEEE SS TTEEEEEEEEE STT EEEEEEEETTEEEEEE GGGEEEEETTT EE SSGGG B EE S :
ExpBur :ebbeeeebeeeeeeeebebebbbbbeeeebeeebbbbbebeeeebbbbebebbbbbbeeeeeeeebeebeebebbeeeeeeee:
Contact : b bb b b b bb b b b b
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[assembly_id:1]
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