Protein Model on 8tm2_A_1_E_1 (TEMPLATE: 8tm2 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(KLRD1_HUMAN) A 1 (A) polymer(polypeptide(L)) [253 aa] NKG2-D type II integral membrane protein :NKG2D_HUMAN:NKG2D_HUMAN
2 b E 1 (A) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 122S(I) 125H(N) 127A(S) (identity: 0.0 %/34.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8tm2_A_1 identity=34.9%
queryA        30:LLKNSFTKLSIEPAFTPGPNIELQK-------DSDCCSCQEKWVGYRCNCYFISSEQKTWNESRHLCASQKSSLLQLQNTDELDFMSSSQQFYWIGLSYS: 122
                :*   ** *  **   **   *  *         * *  *   *  *  ***    * * * **   * **  ***        *         * **   :
8tm2_A_1     110:LYASSF-KGYIENCSTPNTYICMQRTVQIPLTESYCGPCPKNWICYKNNCYQFFDESKNWYESQASCMSQNASLLKVYSKEDQDLLKLVKSYHWMGLVHI: 208
SecStr          :EEETTT-EEEEE TTS EEEEEEEETTTS SSSEEEEEE TTSEEETTEEEEEEEEEE HHHHHHHHHHTT EE     TTTTGGGGGB SEEEEEEEEE:    
ExpBur          :bbbbeb-ebbbbebeeebebbbbbebeebeeeeeebbebbeebbbbbebbbbeeeeeebbeebeebbeeeebbbbebebeeebebbeebeeebbbbbebe:    
Contact         :                                                                                                   b

queryA       123:EEHTAWLWENGSALSQYLFPSFETFNTKNCIAYNPNGNALDESCEDKNRYICKQQ: 177
                :     * ** ** **  *    *      *  *        * *   * *** * :
8tm2_A_1     209:PTNGSWQWEDGSILSPNLLTIIE-MQKGDCALYASSFKGYIENCSTPNTYICMQR: 262
SecStr          :TTTTEEE TTS B  TTS EEEE-SSSSSEEEEETTTEEEEE TTS EEEEEE  :    
ExpBur          :eeeeebebeeeeeeeeebbeeee-eeeeebbbbbbebebebbebeeebebbbbee:    
Contact         :  b b                                                                                               


Input Residue Numbers for Focused Sites

ex) 2,15,123