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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(BASI_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [209 aa] | Junctional adhesion molecule 1 :JAM1_HUMAN | |
2 | b | B 1 (B) | polymer(polypeptide(L)) [208 aa] | Junctional adhesion molecule 1 :JAM1_HUMAN | 140G(T) 141T(V) 142V(N) 143F(I) 144T(P) 145T(S) 146V(S) (identity: 0.0 %/32.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:1nbq_A_1 identity=32.2% |
queryA 40:VELHCEAVGSPVPEIQWWFEGQGPNDTCSQLWDGARLDRVH--IHATYHQHAA---STISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVV: 134 :* * * * * * * ** * ** * * * * ****** * * * *: 1nbq_A_1 22:VKLSCAYSGFSSPRVEWKFD-QG---------DTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSY-------GEVKVKLIV: 104 SecStr : EEE EEES SSEEEEEEEE-ET---------TEEEESEETTEE TTTTTT EEETTEEE S TTS SEEEEEEEETTSS E-------E EEE E: ExpBur :bebbbeeeebeeeebbbebe-ee---------eeeeebbeeeebbeebeeebeeeeebbebeebeeebbbebbbbbbbeeeebe-------bebebebbb: queryA 135:LV--LEPGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVL: 178 :** * * **** * * * * * : 1nbq_A_1 105:LVPPSKPTVNIPSSATIGNRAVLTCSEQD-GSPPSEYTWFKDGIVM: 149 SecStr :EB SEEETTS EEE S- BS EEEEEETT : ExpBur :bbebeebebebeeeeeeeeebebebebee-bbbebebbbbbeeeeb: Contact : bbbbbbb |