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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ASM_HUMAN) | D 1 (D) | polymer(polypeptide(L)) [527 aa] | Sphingomyelin phosphodiesterase :ASM_MOUSE | |
2 | b | J 1 (J) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | 333F 397N 399T 400D (identity: 100.0 %/88.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5fic_D_1 identity=88.4% |
queryA 88:NLTCPICKGLFTAINLGLKKEPNVARVGSVAIKLCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHWDIFSSWNISLPTVPKPP: 187 :***** ** **** * ***************** * * *** **** ******* **** **************** ******** ****** *****: 5fic_D_1 11:NLTCPACKVLFTALNHGLKKEPNVARVGSVAIKICKMLNIAPLDVCQSAVHLFEDDVVEVWTRSVLSPSEACGLLLGSSCGHWDIFSTWNISLPSVPKPP: 110 SecStr : HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTTTTSS HHHHHHHHHHHHHHHHHHHHHTTT HHHHHHHHH GGG TT SS : ExpBur :eeebeebeeebeeebebbeeeebbeeebeeebeebeeeeebeeebbeebbeebbebebebebebeebbebbbbeeeeeebeeeebeeebebeeeeeeeee: queryA 188:PKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWTGDIPAHDVW: 287 :*************** ********** ******* ************ ** * *** ****************** ******** **************: 5fic_D_1 111:PKPPSPPAPGAPVSRVLFLTDLHWDHEYLEGTDPYCADPLCCRRGSGWPPNSQKGAGFWGEYSKCDLPLRTLESLLKGLGPAGPFEMVYWTGDIPAHDVW: 210 SecStr : TT EEEEEEE B TTB TTS TT SSSS SBTTS SSS SS SSS B HHHHHHHHHT TTT SEEEE B S GG: ExpBur :eeeeeeeeeeeeebebbbbbbbbbbeebeeebbbebebebbbbeebeebeeeeeebbebbbbbebbbbeebbebbbeebeebbebebbbbbbbbbbbbeb: queryA 288:HQTRQDQLRALTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYALSPYPGLRLISLNMNFC: 387 : * ********** * ************************ ****** ** ** **************** ** ********** * *************: 5fic_D_1 211:QQSRQDQLRALTTITDLVRKFLGPVPVYPAVGNHESTPVNGFPPPFIKGNQSSQWLYEAMAKAWEPWLPADALHTLRIGGFYALTPRPGLRLISLNMNFC: 310 SecStr :G HHHHHHHHHHHHHHHHHHHTTS EEE B SSSSSSTT TT STTSTHHHHHHHHHHTTTTS HHHHHHHHHHS EEE SSTTEEEEE BGGGS: ExpBur :ebeeeebeebbeebbebbeeebeeeebbbbbbbbbbbbbbbbbbeebeeeebbebbbebbbebbeebbeeebbeebeebbbbbbeebeebbbbbbbbbbb: Contact : b queryA 388:SRENFWLLINSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGHCLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFLAPSA: 487 :********************** ****** ************************* * ******** ************ ********************: 5fic_D_1 311:SRENFWLLINSTDPAGQLQWLVEELQAAENRGDKVHIIGHIPPGHCLKSWSWNYYKIIARYENTLAGQFFGHTHVDEFEIFYDEETLSRPLAVAFLAPSA: 410 SecStr : TT GGGGT SSGGGHHHHHHHHHHHHHHHT EEEEE SS GGGS HHHHHHHHHHHHHTTTTEEEEEE SS S EEEEEE TTTS SEEEEEEE S: ExpBur :beebbbbebebebbeebbebbbebbbbbbeeebebbbbbbbbbbebbebbbebbbbbbbbbbbbbbbbbbbebbbbbbbbbbbeeebeebbbbbbbbbbb: Contact : b bb queryA 488:TTYIGLNPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPSEPCG: 587 :** * ************** ******************** * * * *********** * ********* * *********************: 5fic_D_1 411:TTFINLNPGYRVYQIDGNYPGSSHVVLDHETYILNLTQANAAGGTPSWKRLYRARETYGLPDAMPASWHNLVYRMRDDEQLFQTFWFLYHKGHPPSEPCG: 510 SecStr :S TTT EEEEEEEE SSTT EEEEEEEEE HHHHSSTT EEEEEEHHHHHT S SSHHHHHHHHHHHHH HHHHHHHHHHHTTT SS : ExpBur :bbbeebbbbbbbbebbbeeeebbbbbbbbbbbbbbbeebeeeeeebebeebbebeeebebeebebebbbebbbebeeeeebbeebbebbbbbeeeeeebe: queryA 588:TPCRLATLCAQLSARADSPALCRHLMP: 614 :***************************: 5fic_D_1 511:TPCRLATLCAQLSARADSPALCRHLMP: 537 SecStr :HHHHHHHHHHHH SSS GGGGTTT : ExpBur :eeebeebbeebbbbbbebeebbeebee: |