[pdbjlvh2]Protein Model on 5fic_C_1_H

Protein Model on 5fic_C_1_H_1 (TEMPLATE: 5fic )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:3]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(ASM_HUMAN)	C 1 (C)	polymer(polypeptide(L)) [527 aa]	Sphingomyelin phosphodiesterase :ASM_MOUSE
2	b		H 1 (H)	branched(oligosaccharide)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	522N 524T 525Q 536Q(K) 574F 579G (identity: 83.3 %/88.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5fic_C_1 identity=88.4%

queryA        88:NLTCPICKGLFTAINLGLKKEPNVARVGSVAIKLCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHWDIFSSWNISLPTVPKPP: 187
                :***** ** **** * ***************** *  * ***  **** ******* **** **************** ******** ****** *****:
5fic_C_1      11:NLTCPACKVLFTALNHGLKKEPNVARVGSVAIKICKMLNIAPLDVCQSAVHLFEDDVVEVWTRSVLSPSEACGLLLGSSCGHWDIFSTWNISLPSVPKPP: 110
SecStr          :  HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHTTSS HHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHH GGG    TT        S     :    
ExpBur          :eeebeebeeebeeebeebeeeeebeeebeeebeebeeeeebeeebbeebeeeebebebebebebeeeeebbbbeeeeeebeeeebeeebebeeeeeeeee:    

queryA       188:PKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWTGDIPAHDVW: 287
                :*************** ********** ******* ************ ** *  *** ****************** ******** **************:
5fic_C_1     111:PKPPSPPAPGAPVSRVLFLTDLHWDHEYLEGTDPYCADPLCCRRGSGWPPNSQKGAGFWGEYSKCDLPLRTLESLLKGLGPAGPFEMVYWTGDIPAHDVW: 210
SecStr          :        TT  EEEEEEE    B TTB TTS TT SSSS SBTTS   TTT     SS  SSS  B HHHHHHHHHT TTT   SEEEE    B S GG:    
ExpBur          :eeeeeeeeeeeeebebbbbbbbbbbeebeeebbbebebebbbbeebeebeeeeeebbebbbbbebbbbeebbebbbeebeebbebebbbbbbbbbbbbeb:    

queryA       288:HQTRQDQLRALTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYALSPYPGLRLISLNMNFC: 387
                : * ********** * ************************ ****** ** ** **************** ** ********** * *************:
5fic_C_1     211:QQSRQDQLRALTTITDLVRKFLGPVPVYPAVGNHESTPVNGFPPPFIKGNQSSQWLYEAMAKAWEPWLPADALHTLRIGGFYALTPRPGLRLISLNMNFC: 310
SecStr          :G  HHHHHHHHHHHHHHHHHHHTTS EEE   STTSSSTT    TT  STTSTHHHHHHHHHHHTTTS HHHHHHHHHHS EEE SSTTEEEEE  GGGS:    
ExpBur          :ebeeeebeebbeebbebbeeebeeeebbbbbbbbbbbbbbbbbbeebeeeebbebbbebbbebbeebbeeebbeebeebbbbbbeebeebbbbbbbbbbb:    

queryA       388:SRENFWLLINSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGHCLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFLAPSA: 487
                :********************** ****** ************************* * ******** ************ ********************:
5fic_C_1     311:SRENFWLLINSTDPAGQLQWLVEELQAAENRGDKVHIIGHIPPGHCLKSWSWNYYKIIARYENTLAGQFFGHTHVDEFEIFYDEETLSRPLAVAFLAPSA: 410
SecStr          : SS GGGGT  SSGGGHHHHHHHHHHHHHHHT EEEEE SS GGGS HHHHHHHHHHHHHTTTTEEEEEE SS S EEEEEE TTTS SEEEEEEE   S:    
ExpBur          :beebbbbbeebebbeebbebbbebbbbbbeeebebbbbbbbbbbebbebbbebbbbbbbbbbbbbbbbbbbebbbbbbbbbbbeeebeebbbbbbbbbbb:    

queryA       488:TTYIGLNPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPSEPCG: 587
                :** * ************** ********************  *  * *  ***********   *  ********* * *********************:
5fic_C_1     411:TTFINLNPGYRVYQIDGNYPGSSHVVLDHETYILNLTQANAAGGTPSWKRLYRARETYGLPDAMPASWHNLVYRMRDDEQLFQTFWFLYHKGHPPSEPCG: 510
SecStr          :S TTT   EEEEEEEE SSTT    EEEEEEEEE HHHHSSTT    EEEEEEHHHHHT S SSHHHHHHHHHHHHH HHHHHHHHHHHTTT   SS   :    
ExpBur          :bbbeebbbbbbbbebbbeeeebbbbbbbbbbbbbbbeebeeeeeeeebeebbebeeebebeebbbebbbebbbebeeeeebbeebbebbbbbeeeeeebe:    
Contact         :                                  b bb          b                                     b    b        

queryA       588:TPCRLATLCAQLSARADSPALCRHLMP: 614
                :***************************:
5fic_C_1     511:TPCRLATLCAQLSARADSPALCRHLMP: 537
SecStr          :HHHHHHHHHHHH  SSS GGGGTTT  :    
ExpBur          :eeeeeebbeebbbbbbebeebbeebee:

Protein Model on 5fic_C_1_H_1 (TEMPLATE: 5fic )

Input Residue Numbers for Focused Sites