[pdbjlvh2]Protein Model on 5i8r_C_1_CA

Protein Model on 5i8r_C_1_CA_1 (TEMPLATE: 5i8r )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:3]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(ASM_HUMAN)	C 1 (C)	polymer(polypeptide(L)) [528 aa]	Sphingomyelin phosphodiesterase :ASM_HUMAN
2	b		CA 1 (C)	non-polymer(NAG)	2-acetamido-2-deoxy-beta-D-glucopyranose	373P 374Y 505N (identity: 100.0 %/100.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5i8r_C_1 identity=100.0%

queryA        86:WGNLTCPICKGLFTAINLGLKKEPNVARVGSVAIKLCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHWDIFSSWNISLPTVPK: 185
                :****************************************************************************************************:
5i8r_C_1      38:WGNLTCPICKGLFTAINLGLKKEPNVARVGSVAIKLCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHWDIFSSWNISLPTVPK: 137
SecStr          :  TTHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTT S HHHHHHHHHHHHHHHHHHHHTTTTSHHHHHHHHH TTT    TT        SS  :    
ExpBur          :eeeeebeebeeebeeeeeebeeeeebeeebeeebeebeeeeeeeeebbeeebeebbebebbbebebeeeeebbbbeeeeeebbeeebeeebebeeeeeee:    

queryA       186:PPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWTGDIPAHD: 285
                :****************************************************************************************************:
5i8r_C_1     138:PPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWTGDIPAHD: 237
SecStr          :          TT  EEEEEEE    B TTB TTS TT SSSS SBTTS    TTS    SS  SSS  B HHHHHHHHHT GGG   SEEEE S  B S :    
ExpBur          :eeeeeeeeeeeeeeebebbbbbbbbbbeebeeebbbebebebbbbeebeeeeeeeeebbebbbebebbbbeebbebbbeebeebeebebbbbbbbbbbbb:    

queryA       286:VWHQTRQDQLRALTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYALSPYPGLRLISLNMN: 385
                :****************************************************************************************************:
5i8r_C_1     238:VWHQTRQDQLRALTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYALSPYPGLRLISLNMN: 337
SecStr          :TTS  HHHHHHHHHHHHHHHHHHHTTS EEE   SSSSSSTT    TT  STTSSHHHHHHHHHHSTTTS HHHHHHHHHHS EEEEEETTEEEEE  GG:    
ExpBur          :bbebeeeebeebbeebbebbeeebeeeebbbbbbbbbbbbbbbbbbeebeeeebbebbbeebbebbeebbeeebbebbeebbbbbbebbeebbbbbbbbb:    
Contact         :                                                                                       bb           

queryA       386:FCSRENFWLLINSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGHCLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFLAP: 485
                :****************************************************************************************************:
5i8r_C_1     338:FCSRENFWLLINSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGHCLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFLAP: 437
SecStr          :GT TT GGGGT  SSGGGHHHHHHHHHHHHHHHT EEEEE SS GGGS HHHHHHHHHHHHHTTTTEEEEEE SS SSEEEEEE TTTS SEEEEEEE  :    
ExpBur          :bbbeebbbbbeebebbeebbeebbebbbebbeeebebbbbbbbbbbebbebbbebbbebbbbbbbbbbbbbbbebbbbbbbbbbbeeebeebbbbbbbbb:    

queryA       486:SATTYIGLNPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPSEP: 585
                :****************************************************************************************************:
5i8r_C_1     438:SATTYIGLNPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPSEP: 537
SecStr          : SS TTT   EEEEEEEE SSTT    EEEEEEEE  HHHHTSTT     EEEEEHHHHHT S  SHHHHHHHHHHHHH HHHHHHHHHHHTTT   SS :    
ExpBur          :bbbbeeebbbbbbbbbbbbeeeebbbbbebbbbbbbebeebeeeeeebebeebbebeeebebeebebebbbebbeebeeeeebbeebbebbbbbeeeeee:    
Contact         :                   b                                                                                

queryA       586:CGTPCRLATLCAQLSARADSPALCRHLM: 613
                :****************************:
5i8r_C_1     538:CGTPCRLATLCAQLSARADSPALCRHLM: 565
SecStr          :  HHHHHHHHHHHH  STT GGGGTTT :    
ExpBur          :beeeebeebbbebbebbbebeebbeebe:

Protein Model on 5i8r_C_1_CA_1 (TEMPLATE: 5i8r )

Input Residue Numbers for Focused Sites