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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ASM_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [528 aa] | Sphingomyelin phosphodiesterase :ASM_HUMAN | |
2 | b | H 1 (H) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 522N 525Q 536Q 574F (identity: 100.0 %/100.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5i8r_B_1 identity=100.0% |
queryA 86:WGNLTCPICKGLFTAINLGLKKEPNVARVGSVAIKLCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHWDIFSSWNISLPTVPK: 185 :****************************************************************************************************: 5i8r_B_1 38:WGNLTCPICKGLFTAINLGLKKEPNVARVGSVAIKLCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHWDIFSSWNISLPTVPK: 137 SecStr : S SSHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTT S HHHHHHHHHHHHHHHHHHHHTTTTSHHHHHHHHH TTT TT SS : ExpBur :eeeeebeebeeebeeeeeebeeeeebeeebeeebeebeeeeeeeeebbeeebeebbebebbbebebeeeeebbbbeeeeeebbeeebeeebebeeeeeee: queryA 186:PPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWTGDIPAHD: 285 :****************************************************************************************************: 5i8r_B_1 138:PPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWTGDIPAHD: 237 SecStr : TT EEEEEEE B TTB TTS TT SSSS SBTTS TTS SS SSS B HHHHHHHHHT GGG SEEEE S B S : ExpBur :eeeeeeeeeeeeeeebbbbbbbbbbbbeebeeebbbebebebbbbeebeeeeeeeeebbebbeebebbbbeebbebbbeebeebeebebbbbbbbbbbbb: queryA 286:VWHQTRQDQLRALTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYALSPYPGLRLISLNMN: 385 :****************************************************************************************************: 5i8r_B_1 238:VWHQTRQDQLRALTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYALSPYPGLRLISLNMN: 337 SecStr :TTS HHHHHHHHHHHHHHHHHHHTTS EEE SSSSSSTT TT STTSSHHHHHHHHHHSTTTS HHHHHHHHHHS EEEEEETTEEEEE GG: ExpBur :bbebeeeebeebbeebbebbeeebeeeebbbbbbbbbbbbbbbbbbeebeeeebbebbbeebbebbeebbeeebbebbeebbbbbbebbeebbbbbbbbb: queryA 386:FCSRENFWLLINSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGHCLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFLAP: 485 :****************************************************************************************************: 5i8r_B_1 338:FCSRENFWLLINSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGHCLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFLAP: 437 SecStr :GT TT GGGGT SSGGGHHHHHHHHHHHHHHHT EEEEE SS GGGS HHHHHHHHHHHHHTTTTEEEEEE SS S EEEEEE TTTS SEEEEEEE : ExpBur :bbbeebbbbbbebebbeebbeebbebbbebbeeebebbbbbbbbbbebbebbbebbbebbbbbbbbbbbbbbbebbbbbbbbbbbeeebeebbbbbbbbb: queryA 486:SATTYIGLNPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPSEP: 585 :****************************************************************************************************: 5i8r_B_1 438:SATTYIGLNPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPSEP: 537 SecStr : SS TTT EEEEEEEE SSTT EEEEEEEEE HHHHTSTT EEEEEEHHHHHT S SHHHHHHHHHHHHH HHHHHHHHHHHTTT SS : ExpBur :bbbbeeebbbbbbbbbbbbeeeebbbbbebbbbbbbebeebeeeeeebebeebbebeeebebeebbbebbbebbeebeeeeebbeebbebbbbbeeeeee: Contact : b b b b queryA 586:CGTPCRLATLCAQLSARADSPALCRHLM: 613 :****************************: 5i8r_B_1 538:CGTPCRLATLCAQLSARADSPALCRHLM: 565 SecStr : HHHHHHHHHHHH STT GGGGTTT : ExpBur :beeeebeebbbebbebbbebeebbeebe: |