[pdbjlvh2]Protein Model on 5fic_B_1_G

Protein Model on 5fic_B_1_G_1 (TEMPLATE: 5fic )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(ASM_HUMAN)	B 1 (B)	polymer(polypeptide(L)) [527 aa]	Sphingomyelin phosphodiesterase :ASM_MOUSE
2	b		G 1 (G)	branched(oligosaccharide)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	520I 522N 524T 525Q 536Q(K) 579G (identity: 83.3 %/88.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5fic_B_1 identity=88.4%

queryA        88:NLTCPICKGLFTAINLGLKKEPNVARVGSVAIKLCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHWDIFSSWNISLPTVPKPP: 187
                :***** ** **** * ***************** *  * ***  **** ******* **** **************** ******** ****** *****:
5fic_B_1      11:NLTCPACKVLFTALNHGLKKEPNVARVGSVAIKICKMLNIAPLDVCQSAVHLFEDDVVEVWTRSVLSPSEACGLLLGSSCGHWDIFSTWNISLPSVPKPP: 110
SecStr          :  HHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHTT S HHHHHHHHHHHHHHHHHHHHTTTT HHHHHHHHH GGG    TT        SS    :    
ExpBur          :eeebeebeeebeeebeebeeeeebeeebeeebeebeeeeebeeebbeebbeebbebbbebebebeebeebbbbeeeeeebeeeebeeebebeeeeeeeee:    

queryA       188:PKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWTGDIPAHDVW: 287
                :*************** ********** ******* ************ ** *  *** ****************** ******** **************:
5fic_B_1     111:PKPPSPPAPGAPVSRVLFLTDLHWDHEYLEGTDPYCADPLCCRRGSGWPPNSQKGAGFWGEYSKCDLPLRTLESLLKGLGPAGPFEMVYWTGDIPAHDVW: 210
SecStr          :        TT  EEEEEEE    B TTB TTS TT SSSS SBTTS   TTT     SS  SSS  B HHHHHHHHHT TTT   SEEEE    B S GG:    
ExpBur          :eeeeeeeeeeeeebebbbbbbbbbbebbeeebbbebebebbbbeebeebeeeeeebbebbbbbebbbbeebbebbbeebeebbebebbbbbbbbbbbbeb:    

queryA       288:HQTRQDQLRALTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYALSPYPGLRLISLNMNFC: 387
                : * ********** * ************************ ****** ** ** **************** ** ********** * *************:
5fic_B_1     211:QQSRQDQLRALTTITDLVRKFLGPVPVYPAVGNHESTPVNGFPPPFIKGNQSSQWLYEAMAKAWEPWLPADALHTLRIGGFYALTPRPGLRLISLNMNFC: 310
SecStr          :G  HHHHHHHHHHHHHHHHHHHTTS EEE   STTSSSTT    TT  STTSSHHHHHHHHHHHTTTS HHHHHHHHHHS EEEEEETTEEEEE  GGGS:    
ExpBur          :ebeeebbeebbeebbebbeeebeeeebbbbbbbbbbbbbbbbbbeebeeebbbebbbeebbebbeebbeeebbeebeebbbbbbebeeebbbbbbbbbbb:    

queryA       388:SRENFWLLINSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGHCLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFLAPSA: 487
                :********************** ****** ************************* * ******** ************ ********************:
5fic_B_1     311:SRENFWLLINSTDPAGQLQWLVEELQAAENRGDKVHIIGHIPPGHCLKSWSWNYYKIIARYENTLAGQFFGHTHVDEFEIFYDEETLSRPLAVAFLAPSA: 410
SecStr          :BSS GGGGT  SSGGGHHHHHHHHHHHHHHHT EEEEE SS GGGB HHHHHHHHHHHHHTTTTEEEEEE SS SSEEEEEE TTTS SEEEEEEE   S:    
ExpBur          :beebbbbbbebebbeebbebbbebbbbbbeeebebbbbbbbbbeebbebbbebbbbbbbbbbbbbbbbbbbebbbbbbbbbbbeeebeebbbbbbbbbbb:    

queryA       488:TTYIGLNPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPSEPCG: 587
                :** * ************** ********************  *  * *  ***********   *  ********* * *********************:
5fic_B_1     411:TTFINLNPGYRVYQIDGNYPGSSHVVLDHETYILNLTQANAAGGTPSWKRLYRARETYGLPDAMPASWHNLVYRMRDDEQLFQTFWFLYHKGHPPSEPCG: 510
SecStr          :S TTT   EEEEEEEE SSTT    EEEEEEEEE HHHHSSTT    EEEEEEHHHHHT S SSHHHHHHHHHHHHH HHHHHHHHHHHTTT   SS   :    
ExpBur          :bbbeebbbbbbbbbbbbeeeebbbbbbbbbbbbbbbeebeeeeeebebeeebebeeebebeebbbebbbebbbebeeeeebbeebbebbbbbeeeeeebe:    
Contact         :                                b b bb          b                                          b        

queryA       588:TPCRLATLCAQLSARADSPALCRHLMP: 614
                :***************************:
5fic_B_1     511:TPCRLATLCAQLSARADSPALCRHLMP: 537
SecStr          :HHHHHHHHHHHH  SSS GGGGTTT  :    
ExpBur          :eeebbebbeebbebbbebeebbeebee:

Protein Model on 5fic_B_1_G_1 (TEMPLATE: 5fic )

Input Residue Numbers for Focused Sites