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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ASM_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [426 aa] | Acid sphingomyelinase-like phosphodiesterase 3a :ASM3A_MOUSE | |
2 | b | D 1 (D) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 520I(Y) 522N 524T 525Q(E) 579G(S) (identity: 40.0 %/35.1 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5fc5_A_1 identity=35.1% |
queryA 191:PSPPAPGAP-VSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAG-PFDMVYWTGDIPAHD-VW: 287 :* ** ** * **** * * ** * * ** ** * ** * * * **** * * * : 5fc5_A_1 12:PLAPADRAPAVGQFWHVTDLHLDPTY-HITD-DRTKVCASSKGAN---ASNPGP--FGD-VLCDSPYQLILSAFDFIKNSGQEASFMIWTGDSPPHVPVP: 103 SecStr : SS EEEEEE B TT - S-SGGGS GGGTTS --- SS BT--TB -TTS B HHHHHHHHHHHHTS SEEEE S S GG: ExpBur :eeeeeeeeeeebbbbbbbbbbbbeeb-eeee-eeeebbebbeebe---beebbe--bbb-bbbbbbeebbebbbebbeeeeeebbbbbbbbbbbbebeee: queryA 288:HQTRQDQLRALTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYA--LSPYPGLRLISLNMN: 385 : * * * * ** *** * * * * * * *** ** ** **** **** **** *: 5fc5_A_1 104:ELSTGTVIKVITNMTMTVQNLFPNLQVFPALGNHDYWPQDQLPI-------VTSKVYSAVADLWKPWLGEEAISTLKKGGFYSQKVASNPGLRIISLNTN: 196 SecStr :G HHHHHHHHHHHHHHHHHH TT EEEE TTSSSSTT S-------S HHHHHHHHHHTTTS HHHHHHHHHHS EEEE TTSTTEEEEE GG: ExpBur :ebeeeebeebbeebbebbbeebeebbbbbbbbbbbbeeebbbbe-------eebebbebbbebbeebbeeebbebbeebbbbbeebeebeebbbbbbbbb: queryA 386:FCSRENFWLLINSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGH---------CLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSR: 476 : * * **** * ** * ** ** * * * * ** * ** **** * * * : 5fc5_A_1 197:LYYGPNI-MTLNKTDPANQFEWLENTLNSSLWNKEKVYIIAHVPVGYLPYATDTPAIRQYYNEKLLDIFRRYSSVIAGQFYGHTHRDSLMVLSDKN--GN: 293 SecStr :GG TT G-GGTT SSGGGHHHHHHHHHHHHHHTT EEEEEESS SSB TTSSS BSS HHHHHHHHHHHHHTTTTEEEEEE SS S EEEEEE TT--S : ExpBur :bbbeebe-ebeeeeebbebbebbeebbeebeeeebebbbbbbbbbbbbbeeeeebbbbeebbeebbebbeebbebbebbbbbbbbbbbbbbbbeee--ee: queryA 477:PLAVAFLAPSATTYIGL------NPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRM-RGDMQLF: 569 :** * ** * * *** * * * ** * **** ** * * * * * * ** * *: 5fc5_A_1 294:PLNSVFVAPAVTPVKGVLQKETNNPGVRLFQ----YKPGDYTLLDMVQYYLNLTEANLKGE-SNWTLEYVLTQAYSVADLQPKSLYALVQQFATKDSKQF: 388 SecStr :EEEEEEE S TT S EEEEEE----E TTT EEEEEEEE HHHHHHHT - EEEEEHHHHHT S SSHHHHHHHHHHHTSTT HHH: ExpBur :bebbbbbbbbbbbbbeeeeebbbbbbbbbbe----beeeebebebbbbbbbebeebbeeee-eebeebbbbbebbebebbeeeebeebbeebeeeebebb: Contact : b b bb queryA 570:QTFWFLYHKGHPPSEPCGTPCRLATLCA--QLSARADSPALCRHL: 612 : * * * * ** * * **: 5fc5_A_1 389:LKYYHYYFVSYDSSATCDQHCKTLQVCAIMNLDSMSYDDCLKQHL: 433 SecStr :HHHHHHHTTTS TT HHHHHHHHHHHH SHHHHHHHHHHH : ExpBur :eebbebbbbbeeeebebeeebbbbbbbbbbbbbbebbeebbeeee: Contact : b |