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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ASM_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [412 aa] | Acid sphingomyelinase-like phosphodiesterase 3b :ASM3B_MOUSE | |
2 | b | C 1 (C) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 358E 407W 410G(D) 411E(V) 414A(N) 417D(R) (identity: 33.3 %/33.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5kas_A_1 identity=33.2% |
queryA 200:VSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAGPF-DMVYWTGDIPAHDVWHQTRQDQLRAL: 298 : * *** * * ** * * * ** ** * ** * * * * * **** * * : 5kas_A_1 12:LGRFWHISDLHLDPNYTVSKDPLQVCP-----SAGSQPVL--NAGPWGDY-LCDSPWALINSSLYAMKEIEPKPDFILWTGDDTPHVPNESLGEAAVLAI: 103 SecStr : EEEEEE B TT SSGGGS G-----GGTTS --S BTTB T-TS B HHHHHHHHHHHHHH SS SEEEE S S GGGS HHHHHHH: ExpBur :ebebbbbbbbbbbeebeeeeeeeebbe-----bbeeeebe--ebbebbbb-ebbbbbebbebbbebbeeeeeebbbbbbbbbbbbbbeeeebebeebbeb: queryA 299:TT-VTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYALS---PYPGLRLISLNMNFCSRENFWL: 394 : * * ** * *** * * ** * * * * *** * * ** * * ** * * : 5kas_A_1 104:VERLTNLIKEVFPDTKVYAALGNHDFHPKNQFPA-------QSNRIYNQVAELWRPWLSNESYALFKRGAFYSEKLPGPSRAGRVVVLNTNLYYSNN-EQ: 195 SecStr :HHHHHHHHHHHSTT EEE TTSSSSTT S-------S HHHHHHHHHTGGGS HHHHHHHHHHS EEEE TTSSSEEEEE GGGGBTT -GG: ExpBur :beebbebbeebbeebebbbbbbbbbbeeebbbbe-------eebebbeebbebbeebbeeebbebbeebbbbbbebeeebebbbbbbbbbbbbbeeb-ee: Contact : b queryA 395:LINSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGHCLK---------SWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFLAP: 485 : ** * ** * * * * *** *** * * * * ***** * * * *** * * ** *: 5kas_A_1 196:TAGMADPGEQFRWLGDVLSNASRDGEMVYVIGHVPPGFFEKTQNKAWFRESFNEEYLKVIQKHHRVIAGQFFGHHHTDSFRMFYD--NTGAPINVMFLTP: 293 SecStr :GTT SSGGGHHHHHHHHHHHHHHTT EEEEEESS SSB TTSSS BSB HHHHHHHHHHHHHHGGGEEEEEEEEEES EEEEEE --TTS EEEEEEEEE: ExpBur :beeeeebeebbebbbebbeebeeeebebbbbbbbbbbbbbbbeeebbbeeebbeebbebbeebbebbbbbbbbbbbbbbbbbbbb--eeeeebbbbbbbb: Contact : b bb b b queryA 486:SA----TTYIGL-----NPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLY: 576 : ** * *** * * * ** *** *** * * ** * * * * * * *: 5kas_A_1 294:GVTPWKTTLPGVVDGANNPGIRIFE----YDRATLNLKDLVTYFLNLRQANVQ-ETPRWEQEYRLTEAYQVPDASVSSMHTALTRIASEPHILQRY-YVY: 387 SecStr : S TT SS EEEEEE----E TTT EEEEEEEE HHHHTTS-SS EEEEEHHHHHT SSSSHHHHHHHHHHHHH HHHHHHH-HHH: ExpBur :bbbbbeeeeeebeebbbbbbbbbbb----beeeebebebbbbbbbebeebeee-eebebeebbebbebbebeebeeebbeebbebbbeeeebbbeb-bbb: queryA 577:HKGHPPSEPCGTPCRLATLCAQLSARADSPALCRH: 611 : * ** ** * * *: 5kas_A_1 388:NSVSYNHLTCEDSCRIEHVCAIQHVAFNTYATCLH: 422 SecStr :HTTSS S HHHHHHHHHHHH SHHHHHHHHT: ExpBur :bbbbbbeeebeeebeeebbbbbeebbeeebeebbe: |