Protein Model on 7u06_J_1_Q_1 (TEMPLATE: 7u06 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) J 1 (l) polymer(polypeptide(L)) [191 aa] GTP-binding protein YPT32/YPT11 :YPT32_YEAST
2 b Q 1 (g) polymer(polypeptide(L)) [156 aa] Trafficking protein particle complex subunit BET5 :BET5_YEAST 34S(N) 40T 41I 69R 70F(Y) (identity: 60.0 %/36.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7u06_J_1 identity=36.3%
queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :* *    *******  *        *    * ***  * *    *       **********      * ****     * *            *  *  :
7u06_J_1      13:LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELR: 112
SecStr          :EEEEE  B TTSSHHHHHHHS    SS   TTTSS  EEEEEEEETTEEEEEEEE    SSS  SHHHHTTSS  EEEEEEETT HHHHHTHHHHHHHHH:    
ExpBur          :ebbbbbbbbeebebeebbeebeeeeeeeebeeeebbbebebebebeeeebbbebbbbeeeeeeeeebbebbeebbbbbbbbbbbeeebbeebeeebeebe:    
Contact         :                          b     bb                           bb                                     

queryA       108:IQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI: 169
                :  *      *      *** **   * * *  *       *     ****    **  **   :
7u06_J_1     113:ENAD----DNVAVGLIGNKSDLAHLRAVPTDEAKNFAM-ENQMLFTETSALNSDNVDKAFREL: 170
SecStr          :HHS ----SS EEEEEEE     S   S HHHHHHHHH-TTT EEEE  STTTTHHHHHHHHH:    
ExpBur          :eebe----eebebbbbbbebeeeeeeebeeeebeebbe-eeebeebebbeeeeeebeebbeeb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123