[pdbjlvh2]Protein Model on 6iy1_E

Protein Model on 6iy1_E_1 (TEMPLATE: 6iy1 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:5]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(RAB7A_HUMAN)	E 1 (E)	polymer(polypeptide(L)) [163 aa]	Ras-related protein Rab-11A :RB11A_HUMAN

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6iy1_E_1 identity=41.4%

queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :* **   *******  *        *    * ***  * *    **      *******  *      * ****    ** *     *      *  *  :
6iy1_E_1       3:LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGXXRYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR: 102
SecStr          : EEEEEES TTSSHHHHHHHHHHS   SS    SSEEEEEEEEEETTEEEEEEEEEE  --  HHHHHHHHTTEEEEEEEEETT HHHHHTHHHHHHHHH:    
ExpBur          :ebbbbbbbbeebbbbbbbbbbbeeeeeeeeeebeeeeebeeebebeeeebebbbbbbee--eeeeebeebbeebebbbbbbbbbeeebbebbeeebebbe:    

queryA       108:IQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI: 169
                :  *      *      *** **   * * *  * *    **     ****    *** *****:
6iy1_E_1     103:DHADS----NIVIMLVGNKSDLRHLRAVPTDEARAFA-EKNGLSFIETSALDSTNVEAAFQTI: 160
SecStr          :HHS T----T EEEEEEE GGGGGG  S HHHHHHHH-HHTT EEEE  TTT TTHHHHHHHH:    
ExpBur          :eebee----ebbbbbbbbebeeeeeeebeeeebeebb-eeeebebbbbbbeeeeebeebbeeb:

Protein Model on 6iy1_E_1 (TEMPLATE: 6iy1 )

Input Residue Numbers for Focused Sites