Protein Model on 3qbt_D_1_P_1 (TEMPLATE: 3qbt )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:4]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) D 1 (G) polymer(polypeptide(L)) [169 aa] Ras-related protein Rab-8A :RAB8A_HUMAN
2 b P 1 (G) non-polymer(GNP) PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER 16D 17S 18G 19V 20G 21K 22T 23S(C) 33F 35N(S) 39A(S) 40T 64T 65A 66G 125N 126K 128D 129L(V) 155S 156A 157K (identity: 81.8 %/41.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3qbt_D_1 identity=41.9%
queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :* *    ********          *      *** **       *      ***********     * ****    ** * *    *     *     :
3qbt_D_1       6:LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE: 105
SecStr          :EEEEEEE STTSSHHHHHHHHHHS   TT    SSEEEEEEEEEETTEEEEEEEEEE  SGGGHHHHGGGSTT SEEEEEEETT HHHHHTHHHHHHHHH:    
ExpBur          :ebebbbbbbeebbbebbbebbbeeeeeeeeeebeeeeeeeeebebeeeebebbbebbbbeeeeeeebbeebeebebbbbbbbbbeeebbebbeebbeebe:    
Contact         :        bbbbbbbb         b b   bb                       bbb                                         

queryA       108:IQASPRDPENFPFVVLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN: 172
                :  **  * *      **** *    ***   *          *   *****  **** ** * ** :
3qbt_D_1     106:EHASA-DVEK---MILGNKCDVNDKRQVSKERGEKLALDY-GIKFMETSAKANINVENAFFTLARD: 166
SecStr          :HHS T-T EE---EEEEE TT GGG  S HHHHHHHHHHH-T EEEE BTTTTBSHHHHHHHHHHH:    
ExpBur          :eebee-ebee---bbbbbebeeeeeeebeeeebeebbeee-ebebbbbbbeeeeebeebbbbbbeb:    
Contact         :                 bb bb                          bbb                                                 


Input Residue Numbers for Focused Sites

ex) 2,15,123