Protein Model on 3l0i_D_1_C_1 (TEMPLATE: 3l0i )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) D 1 (D) polymer(polypeptide(L)) [174 aa] Ras-related protein Rab-1A :RAB1A_HUMAN
2 b C 1 (C) polymer(polypeptide(L)) [322 aa] DrrA :Q29ST3_LEGPN 8L 10K 12I(L) 16D 17S 31K(D) 33F(Y) 35N(E) 36Q(S) 37Y 38K(I) 40T 41I 42G 43A(V) 44D 45F 58T(K) 60Q 62W 64T 65A 66G 67Q 68E 69R 70F 71Q(R) 76A(S) 77F(Y) 79R 80G 98T(N) 102W (identity: 64.7 %/40.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3l0i_D_1 identity=40.3%
queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :* *    *******  *            *  *** **       *      ***********       ****     * ***    *     *  *  :
3l0i_D_1      33:LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID: 132
SecStr          :EEEEEEEE TTS GGGGGTTSB      HHHHHH  SEEEEEEEETTEEEEEEEE  TTGGG  S  HHHHSS SEEEEEEETT HHHHHHHHHHHHHHH:    
ExpBur          :ebebbbbbeeebbbebbbeebeeeeeeeeeeeeeeeeeebbebebeeeebbbbbeeeeebeeebebeeebbeebebbbbbbebbeeebbeebeebbeebe:    
Contact         :b b b   bb             b b bbbb bbbbbb            b b b bbbbbbbb    bb bb                 b   b     

queryA       108:IQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA: 170
                :  **    **      *** **    *              **  ***** * **** * * *:
3l0i_D_1     133:RYAS----ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFUTUA: 191
SecStr          :HHS ----SSSEEEEEEE TT SS   S HHHHHHHHHHTT  EEEE SSS HHHHHHHHHHH:    
ExpBur          :eebe----eebbbbbbbbebeeeeeeebeeeebeebbeebebebbbbeeeebeebbebbeebb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123