Protein Model on 2efe_D_1_C_1
(TEMPLATE: 
2efe
)Protein Model on 2efe_D_1_C_1
(TEMPLATE: 2efe
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(RAB7A_HUMAN) | D 1 (D) | polymer(polypeptide(L)) [165 aa] | Small GTP-binding protein-like :Q9SN68_ARATH | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [246 aa] | Similarity to vacuolar protein sorting-associated protein VPS9 :Q9LT31_ARATH | 17S(V) 21K 22T(S) 23S 26N(L) 34S(V) 39A(S) 40T 41I 42G 43A 44D(A) 45F 60Q(E) 62W 63D 64T 65A 66G 67Q 69R 70F(Y) 73L 76A(M) 77F(Y) (identity: 60.0 %/42.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:2efe_D_1 identity=42.7% |
queryA 10:KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQ: 109
:* *** * ** ** * * **** * * * * ********* ** **** ***** * * * *:
2efe_D_1 14:KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQ: 113
SecStr :EEEEE TTS HHHHHHHHHH TTTS S SEEEEEEE SS EEEEEEEE SGGGGGGTHHHHTT SEEEEEEETT HHHHHHHHHHHHHHHHH:
ExpBur :bbbbbbeeebbbeebbbbbbeebbeeeeeeeeebeebeeebeeeeeebebebebbebeeeebeebeeebeebebbbbbbbbbeeebbebbbebbebbeee:
Contact : b bbb b b bbbbbbb b bbbbbb bb b bb
queryA 110:ASPRDPENFPFVVLGNKID-LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR: 171
: * * *** * * * * ** * ***** * ** * ***:
2efe_D_1 114:GNP----NMVMALAGNKSDLLDARKVTAEDAQTYA-QENGLFFMETSAKTATNVKEIFYEIAR: 171
SecStr :S T----T EEEEEEE TT TT S HHHHHHHH-HHTT EEEE SSS TTHHHHHHHHHH:
ExpBur :bee----ebbbbbbbbebeeeeeeebeeeebeebb-eeeebbbbebbbeeeeebeebbeebbe:
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[assembly_id:2]
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