Protein Model on 3mjh_C_1_H_1 (TEMPLATE: 3mjh )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) C 1 (C) polymer(polypeptide(L)) [167 aa] Ras-related protein Rab-5A :RAB5A_HUMAN
2 b H 1 (C) non-polymer(GTP) GUANOSINE-5'-TRIPHOSPHATE 16D(E) 17S 18G(A) 19V 20G 21K 22T(S) 23S 33F 34S(H) 35N(E) 37Y(Q) 39A(S) 40T 65A 66G 125N 126K 128D 129L 155S 156A 157K (identity: 69.6 %/43.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3mjh_C_1 identity=43.0%
queryA         9:LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI: 108
                : *   ** * *** **    *   *      **** ***  *  **  *   ****** **  **    ****     * * *    *     *  *   :
3mjh_C_1       6:FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR: 105
SecStr          :EEEEEE STTSSHHHHHHHHHHS   SS     SEEEEEEEEE SS EEEEEEEEE  SGGGGGGHHHHHTT SEEEEEEETT HHHHHHHHHHHHHHHH:    
ExpBur          :bebbbbbbeebbbbbbbbbbbeeeeeeeeeeeebeeeeeeebebeebebebbbebbbbeeeeeeebeebbeebebbbbbbbbeeeebbebbeebbebbee:    
Contact         :       bbbbbbbb         bbb b bb                        bb                                          

queryA       109:QASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR: 171
                :****    *      *** ** * * *    **      *     *****   **   *  ** :
3mjh_C_1     106:QASP----NIVIALSGNKADLANKRAVDFQEAQSYA-DDNSLLFMETSAKTSMNVNEIFMAIAK: 164
SecStr          :SS T----T EEEEEEE TT GGG  S HHHHHHHH-HHTT EEEE BTTTTBSHHHHHHHHHH:    
ExpBur          :eeee----ebbbbbbbbebeeeeeeebeeeebeebb-eeeebbbbbbbbeeeeebeebbeebbe:    
Contact         :                bb bb                          bbb                                                  


Input Residue Numbers for Focused Sites

ex) 2,15,123