Protein Model on 6ekk_C_1_F_1 (TEMPLATE: 6ekk )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) C 1 (C) polymer(polypeptide(L)) [176 aa] Ras-related protein Rab-35 :RAB35_HUMAN
2 b F 1 (A) non-polymer(SO4) SULFATE ION 45F 47T(I) 60Q (identity: 66.7 %/38.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6ekk_C_1 identity=38.7%
queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :* *  * ******* **        **  *  *** **    *      *  ***********       ***      * ***    *     *  *  :
6ekk_C_1       6:LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-: 104
SecStr          :EEEEEEE  TTSSHHHHHHHH   SS    HHHHSEEEEEEEEEETTEEEEEEEEEETTGGG SS  GGGGTT SEEEEEEETT HHHHHHHHHHHHHH-:    
ExpBur          :ebebbbbbbeebbbeebbeebeeeeeeeeebeeeeebebbbeeebeeebbebbbebeeebeeeeebeeeebeebebbbbbbbbeeeebbebbeebbeeb-:    
Contact         :                                     b b            b                                               

queryA       108:IQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK: 175
                :                *** *   * *              *  *******  ***  *  *    * :
6ekk_C_1     105:----NQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR: 168
SecStr          :----HHH TTSEEEEEEE    GGG  S HHHHHHHHHHHT  EEE BTTTTBSHHHHHHHHHHHHHH:    
ExpBur          :----eeebeebbbbbbbbeeeeeeebebeeeebeebbeebebebbbbbbeeeeebeebbebbbeebbb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123