[pdbjlvh2]Protein Model on 5szk_B

Protein Model on 5szk_B_1 (TEMPLATE: 5szk )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(RAB7A_HUMAN)	B 1 (B)	polymer(polypeptide(L)) [173 aa]	Ras-related protein Rab-1B :RAB1B_HUMAN

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5szk_B_1 identity=40.3%

queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :* *    *******  *            *  *** **       *      ***********       ****     * ***          *  *  :
5szk_B_1      10:LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEID: 109
SecStr          :EEEEEEEE TTSSHHHHHHHHHHS   SS     SEEEEEEEEEETTEEEEEEEEEE  SGGGHHHHHGGGTT SEEEEEEETT HHHHHTHHHHHHHHH:    
ExpBur          :ebebbbbbbeebbbebbbbbbeeeeeeeeeeebebeeeeeebbebeeebbebbbbbbbbeeebeeebbeebeebebbbbbbbbbeeebbebbeebbebbe:    

queryA       108:IQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA: 170
                :  **    **      *** **    *              **  ***** * ****** * *:
5szk_B_1     110:RYAS----ENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMA: 168
SecStr          :HHS ----TT EEEEEEE TT TTT  S HHHHHHHHTTTT  EEE  TTT TTHHHHHHHHH:    
ExpBur          :eebe----eebbebbbbbeeeeeeeeebeeeebeeebeeeebebbbbbbeeeeebeebbbebb:

Protein Model on 5szk_B_1 (TEMPLATE: 5szk )

Input Residue Numbers for Focused Sites