[pdbjlvh2]Protein Model on 4jvs_B

Protein Model on 4jvs_B_1 (TEMPLATE: 4jvs )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(RAB7A_HUMAN)	B 1 (B)	polymer(polypeptide(L)) [170 aa]	Ras-related protein Rab-1A :RAB1A_HUMAN

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4jvs_B_1 identity=40.3%

queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL: 107
                :* *    *******  *            *  *** **       *      ***********       ****     * ***    *     *  *  :
4jvs_B_1      15:LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID: 114
SecStr          :EEEEEEEESTTSSHHHHHHHHHHS          SEEEEEEEEEETTEEEEEEEEEE  SGGGHHHHHTTTTT SEEEEEEETT HHHHHTHHHHHHHHH:    
ExpBur          :ebebbbbbbeebbbeebbebbbeeeeeeeeeebebeeeeeeebebeeeebebebbbbbbbeebbeebbeebeebebbbbbbbbeeeebbeebeebbebbe:    

queryA       108:IQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA: 170
                :  **    **      *** **    *              **  ***** * **** * * *:
4jvs_B_1     115:RYAS----ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA: 173
SecStr          :HHS ----TT EEEEEEE TT  SS  S HHHHHHHHHTTT  EEE BTTTTBSHHHHHHHHH:    
ExpBur          :ebbe----eebbebbbbbebeeeeeeebeeeebeeebeeeebebebbbbeeeeebeebbeebb:

Protein Model on 4jvs_B_1 (TEMPLATE: 4jvs )

Input Residue Numbers for Focused Sites