[pdbjlvh2]Protein Model on 3bfk_B

Protein Model on 3bfk_B_1 (TEMPLATE: 3bfk )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(RAB7A_HUMAN)	B 1 (B)	polymer(polypeptide(L)) [179 aa]	Small GTPase Rab11 :Q76NM4_PLAF7

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3bfk_B_1 identity=38.6%

queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEF: 106
                :* *    *******  *        *    * ***  * **            **********      * ****    ** * *  * *     *  * :
3bfk_B_1       7:LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKEL: 106
SecStr          :EEEEEEE  TTSSHHHHHHHHHHS   SSS    SEEEEEEEEE STT EEEEEEEEESS  SS TTHHHHHTT  EEEEEEETT HHHHHTHHHHHHHH:    
ExpBur          :ebbbbbbbbeebbbbbbbbbbbeeeeeeeeeebeeeeebeeebebeeeeebebebebbeeeeeeeeebeebbeebebbbbbbbbeeeebbeebeebbebb:    

queryA       107:LIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI: 169
                :   *      *      *** **    *           *      **** ** *** **   :
3bfk_B_1     107:RDNADS----NIVILLVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQL: 165
SecStr          :HHHS T----T EEEEEEE TT GGG  S HHHHHHHHHHTT EEEE  TTT TTHHHHHHHH:    
ExpBur          :eeeeee----ebbbbbbbbeeeeeeeeebeeeebeebbeeeebeebbbbbeeeeebeebbeeb:

Protein Model on 3bfk_B_1 (TEMPLATE: 3bfk )

Input Residue Numbers for Focused Sites